Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002126-TA|BGIBMGA002126-PA|IPR009057|Homeodomain-like
(192 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 27 1.3
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 1.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 1.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 4.1
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 25 5.4
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom... 25 5.4
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 7.2
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 25 7.2
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc... 25 9.5
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/80 (22%), Positives = 33/80 (41%)
Query: 62 HSDERLNLHSGTQPTSAYEERFHALRQMKRVVEVFKEDGASASRCRRGAKPQSREPATAA 121
++++RL + + +A EER L R VE+ KE+ + + AT
Sbjct: 236 NAEQRLQISELEKLKAAQEERIEKLSSNNRNVEILKEEKNDLESKLYRFEEYRDKVATLE 295
Query: 122 QFNVWFQNARAKWRRMVTKQ 141
N Q W+ ++T +
Sbjct: 296 LENEKIQTELNSWKSLITNE 315
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 23 FVNRDRWFQIRATATLLSAGDSRGRATINRAVDCPTFIFHSDE 65
++ R+R I++T L+ D +G+ + +D P + DE
Sbjct: 183 YLERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDE 225
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 163 PMGSIQSLPPHSPPYSVMGGPPSP 186
P + SLPP +PP MG P +P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAP 447
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 172 PHSPPYSVMGGPPSP 186
P PP +MGGPP P
Sbjct: 750 PVPPPAPIMGGPPPP 764
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 93 VEVFKEDGASASRCRRGAKPQSRE-PATAAQFNVWFQNARAK 133
VEV KE A R+ AKP+SR+ P + F N AK
Sbjct: 25 VEVPKEASADVMATRKIAKPKSRKRPTSGVSSPGIFANLAAK 66
>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 25.4 bits (53), Expect = 5.4
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 88 QMKRVVEVFKEDGASASRCRRGAKPQ----SREPATAA--QFNVWFQNARAKWRRMVTKQ 141
++ V E+F+E+ ++ + + K Q S EP QFN +NA+ + R + K+
Sbjct: 106 ELSFVKEMFREEDSAVEQGQMNDKQQLLLESSEPTPTIKQQFNDRKKNAQIREREALAKR 165
Query: 142 ENKM 145
E +M
Sbjct: 166 EQEM 169
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 7.2
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 46 GRATINRAVDCPTFIFHSDERLNLHSGTQPTSAYEERFHALRQMKRV--VEVFKEDGASA 103
G +N V+ T I ++ +N++ S E + + M+R E+ K DG
Sbjct: 924 GSKPVNTNVEALTTISSMNQAVNMNFRELDKSIQEFK-RKCQSMEREFKTELRKLDGVLE 982
Query: 104 SRCRRGAKPQSREPATAAQFNVWFQNARAKWRRMVTKQENKMSDKCSPDGS 154
+R +R ++ + R A N+ +R+ E+K SPD S
Sbjct: 983 ARSKRLSQLEERVKLLGAGSTSSIPNSPRASKRVSLDSEDKKLVPASPDKS 1033
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 125 VWFQNARAKWRRMVTKQENK 144
+WFQN RAK + + +QE +
Sbjct: 212 IWFQNRRAKSKLISRRQEEE 231
>SPBC21B10.13c |||transcription factor, homeobox type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 107 RRGAKPQSREPATAAQFNVWFQNARAKWRRMVTKQENKM 145
R+ + + T + +WFQN R RR N++
Sbjct: 63 RQELSKKLKSSMTPRELQIWFQNKRQSLRRSNCLSRNRL 101
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.129 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 789,164
Number of Sequences: 5004
Number of extensions: 28677
Number of successful extensions: 81
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 13
length of query: 192
length of database: 2,362,478
effective HSP length: 69
effective length of query: 123
effective length of database: 2,017,202
effective search space: 248115846
effective search space used: 248115846
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)
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