Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002126-TA|BGIBMGA002126-PA|IPR009057|Homeodomain-like
(192 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0017 - 11264038-11264260,11264376-11264653 35 0.037
03_02_0256 + 6899424-6899876,6900084-6900163,6900475-6900820 33 0.20
08_02_0940 - 22822391-22822781,22822875-22823053,22823079-228234... 30 1.0
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474... 30 1.4
08_02_1031 - 23796755-23797171,23797243-23797595,23797676-23797715 30 1.4
08_02_0052 + 11699468-11699700,11699799-11699916,11699991-117006... 30 1.4
04_04_0710 - 27453135-27453480,27453647-27453726,27453893-274541... 30 1.4
03_01_0630 + 4635297-4636220 30 1.4
06_01_0717 - 5219848-5220178,5220268-5220617,5221807-5221982,522... 29 1.8
10_08_0929 + 21633179-21633377,21633466-21633809,21633905-21634297 29 2.4
09_04_0468 + 17848144-17848174,17849032-17849378,17849505-17849921 29 2.4
04_04_0841 - 28574497-28574883,28575815-28576188,28576262-285764... 29 2.4
02_05_0286 - 27506925-27507278,27508439-27508812,27509041-275092... 29 2.4
11_02_0011 - 7337618-7338496,7338596-7338991 29 3.2
09_03_0144 - 12728697-12729238,12729312-12729432 29 3.2
06_03_1323 + 29313574-29314109,29314428-29315198,29315277-293153... 29 3.2
03_05_0695 - 26851370-26851495,26852949-26853398 28 4.2
10_07_0134 + 13289641-13290216,13290435-13290914 28 5.6
04_04_0667 + 27097741-27098085,27098203-27098547 28 5.6
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 28 5.6
02_05_0618 + 30400338-30400452,30400553-30400692,30400805-304010... 28 5.6
02_05_0134 + 26161904-26162776 28 5.6
01_05_0213 - 19355785-19356522 28 5.6
10_06_0180 + 11526139-11526172,11526365-11527218 27 7.4
09_06_0034 + 20370672-20371109,20371120-20371515 27 7.4
09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697... 27 7.4
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793... 27 9.7
08_02_0670 - 19877091-19877618,19880033-19880436,19880505-19880622 27 9.7
01_07_0019 + 40494709-40494767,40495619-40495703,40495777-404958... 27 9.7
01_06_1818 - 40093327-40093384,40093501-40093580,40093661-400939... 27 9.7
01_06_0040 - 25874308-25874611,25875743-25875822,25876764-258769... 27 9.7
>08_02_0017 - 11264038-11264260,11264376-11264653
Length = 166
Score = 35.1 bits (77), Expect = 0.037
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 128 QNARAKWRRMVTKQENKMSDKC-SPDGSLEMDMYHGPMGSIQSLPPHSPP-YSVMGGPP 184
+ R KWRR EN+ K SP +L+ HGP+ + Q P SPP + +G PP
Sbjct: 94 KRVRRKWRRAGVGCENQSDGKAASPHAALDA-WPHGPVSNPQPAAPCSPPSVTPLGVPP 151
>03_02_0256 + 6899424-6899876,6900084-6900163,6900475-6900820
Length = 292
Score = 32.7 bits (71), Expect = 0.20
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 122 QFNVWFQNARAKWRRMVTKQENKMSDKCSPDGSLEMDMYHGPMGSIQSL-----PPHSPP 176
Q VWFQN RA+ + T+ + + +C + E + +++L PP S
Sbjct: 167 QVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELRALKFAPPPPSSAA 226
Query: 177 YSVMGGPPSPNSMECP 192
+ PP+P M+ P
Sbjct: 227 HQPSPAPPAPFYMQLP 242
>08_02_0940 -
22822391-22822781,22822875-22823053,22823079-22823428,
22823522-22823765
Length = 387
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 122 QFNVWFQNARAKWRRMVTKQENKMSDKCSPDGSLEMDMYHGPMGSIQSLPPHSPPYSVMG 181
Q VWFQN RA+ + T+ + + +C + E H + +++L P Y M
Sbjct: 247 QVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFY--MH 304
Query: 182 GPPSPNSMECP 192
P + SM CP
Sbjct: 305 LPATTLSM-CP 314
>09_04_0424 +
17444261-17444665,17445974-17446367,17447367-17447425,
17447507-17447637,17447737-17447833,17447936-17448100
Length = 416
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 150 SPDGSLEMDMYHGPMGSIQSLPPHSPPYSVMGGPPSPNSMECP 192
+P G+ M M H + PH P+ +G PP P P
Sbjct: 43 APPGAAAMVMQHQMAPAPPQFAPHFVPFHAVGPPPPPQPRAAP 85
>08_02_1031 - 23796755-23797171,23797243-23797595,23797676-23797715
Length = 269
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 64 DERLNLHSGTQPTSAYEERFHALRQMKRVVEVFK-EDGASASRCRRGAKPQSREPATAAQ 122
DE + + G ++R ++ Q++ + F+ E+ R R A+ +P A
Sbjct: 27 DEDMAMCGGRGGGGGEKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVA- 85
Query: 123 FNVWFQNARAKWR 135
VWFQN RA+W+
Sbjct: 86 --VWFQNRRARWK 96
>08_02_0052 +
11699468-11699700,11699799-11699916,11699991-11700659,
11700741-11700842,11700921-11701181,11701838-11702009,
11702128-11702528,11703171-11703587
Length = 790
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 119 TAAQFNVWFQNARAKWRRMVTKQENKMSDK 148
T Q WFQN R K ++ +E K+ K
Sbjct: 101 TETQIKYWFQNCRTKMKKFKNNEERKLLQK 130
>04_04_0710 -
27453135-27453480,27453647-27453726,27453893-27454107,
27454227-27454329
Length = 247
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 122 QFNVWFQNARAKWRRMVTKQENKMSDKCSPDGSLEMDMYHGPMGSIQSLPPHSPPYSVMG 181
Q VWFQN RA+ + T+ + + +C + E + +++L SP +
Sbjct: 122 QVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNM 181
Query: 182 GPPSPNSMECP 192
PP+ +M CP
Sbjct: 182 SPPTTLTM-CP 191
>03_01_0630 + 4635297-4636220
Length = 307
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 80 EERFHALRQMKRVVEVFKEDGA-SASRCRRGAKPQSREPATAAQFNVWFQNARAKWR 135
++R AL Q++ + F D R R A+ +P A VWFQN RA+W+
Sbjct: 42 KKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVA---VWFQNRRARWK 95
>06_01_0717 -
5219848-5220178,5220268-5220617,5221807-5221982,
5222065-5222302,5224492-5224657,5224792-5225159,
5225261-5225436,5227742-5227976,5228242-5228493,
5228513-5228848
Length = 875
Score = 29.5 bits (63), Expect = 1.8
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 12/129 (9%)
Query: 64 DERLNLHSGTQPTSAYEERFHALRQMKRVVEVFKEDGASASRCRRGAKPQSREPA----- 118
DE N +G QP +A E F ++ ++ + R R G+K S E A
Sbjct: 102 DEAANAGAGVQPAAAAAEEFPRHDEVAAYLDAYARRFGVRERVRFGSKVVSAEYAGVPEE 161
Query: 119 TAAQFNVW------FQNARAKWRRMVTKQENKMSDKCSPDGSLEMDMYHGPMGSIQSLPP 172
AA + W F + R +W V +E++ D + +G + S+ + PP
Sbjct: 162 EAAAWERWSGNGEAFGDGRGEWLLTVQHRESENLQTYKFDFVILCIGRYG-VASVPTFPP 220
Query: 173 HSPPYSVMG 181
P + G
Sbjct: 221 KGVPEAFHG 229
>10_08_0929 + 21633179-21633377,21633466-21633809,21633905-21634297
Length = 311
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 122 QFNVWFQNARAKWRRMVTKQENKMSDKCSPDGSLEMDMYHGPMGSIQSL---PPHSPPYS 178
Q VWFQN RA+ + T+ + ++ +C + E H + +++L + P+
Sbjct: 197 QVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRELQELRALKLATAAAAPHH 256
Query: 179 VMGG--PPSPNSMECP 192
+ G PP CP
Sbjct: 257 LYGARVPPPTTLTMCP 272
>09_04_0468 + 17848144-17848174,17849032-17849378,17849505-17849921
Length = 264
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 86 LRQMKRVVEVFKEDGASASRCRRGAKPQSREPATAAQFNVWFQNARAKWR 135
+R ++R EV E+ R R A+ +P A VWFQN RA+W+
Sbjct: 47 VRALERSFEV--ENKLEPERKARLARDLGLQPRQVA---VWFQNRRARWK 91
>04_04_0841 -
28574497-28574883,28575815-28576188,28576262-28576439,
28576816-28576896,28578134-28578361,28578460-28578579,
28578646-28579353,28579471-28579588,28579686-28579978,
28580101-28580169
Length = 851
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 64 DERLNLHSGTQPTSAYEERFHALRQMKRVVEVFKEDGASASRCRRGAKPQSREPATAAQF 123
D+ + G P H +Q++ + +FKE + R A+ R Q
Sbjct: 91 DDDEDAEHGNPPKRKKRYHRHTPQQIQELEAMFKECPHPDEKQR--AELSKRLGLEPRQV 148
Query: 124 NVWFQNARAKWRRMVTKQENKM 145
WFQN R + + + + EN +
Sbjct: 149 KFWFQNRRTQMKMQLERHENSL 170
>02_05_0286 -
27506925-27507278,27508439-27508812,27509041-27509218,
27510878-27511105,27511215-27511316,27511415-27512131,
27512270-27512387,27512500-27512744,27512854-27513054,
27513920-27514324
Length = 973
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 84 HALRQMKRVVEVFKEDGASASRCRRGAKPQSREPATAAQFNVWFQNARAKWRRMVTKQEN 143
H +Q++ + +FKE + R A+ R A Q WFQN R + + + + EN
Sbjct: 274 HTPQQIQELEALFKECPHPDEKQR--AELSRRLSLDARQVKFWFQNRRTQMKTQLERHEN 331
Query: 144 KM 145
+
Sbjct: 332 AL 333
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 120 AAQFNVWFQNARAKWRRMVTKQENKMSDKCSPDGSLEMD 158
AA F + +R K + V+K NK+ + PDGS+ +D
Sbjct: 126 AANFQRQPKRSRKKINKWVSKATNKLIPEILPDGSVHVD 164
>09_03_0144 - 12728697-12729238,12729312-12729432
Length = 220
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 72 GTQPTSAYEERFHALRQMKRVVEVFKEDGASASRCRRGAKPQSREPATAAQFNVWFQNAR 131
G+ +A + R A Q++ + F+E+ R+ + R Q VWFQN R
Sbjct: 85 GSSSAAARKRRLTA-EQVRALERSFEEEKRKLEPERKSELAR-RLGIAPRQVAVWFQNRR 142
Query: 132 AKWR 135
A+W+
Sbjct: 143 ARWK 146
>06_03_1323 +
29313574-29314109,29314428-29315198,29315277-29315328,
29318373-29318909
Length = 631
Score = 28.7 bits (61), Expect = 3.2
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 91 RVVEVFKEDGASASRCRRGAKPQSREPATAAQFNVWFQNARAKWRRMVTKQ-ENKMSDKC 149
R +E EDG S + R + RE AA FN W R + + K+ E + D C
Sbjct: 566 RAMEEGGEDGGSKAARARWWRGNEREGDGAAWFNRWQCRFREEEPTLAVKESELAVIDAC 625
Query: 150 SPDG 153
S G
Sbjct: 626 SKGG 629
>03_05_0695 - 26851370-26851495,26852949-26853398
Length = 191
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 93 VEVFKEDGASASRCRRGAKPQSREPATAAQFNVWFQNARAK-WRRMVTKQENKMSD 147
V F DG S G Q++ + ++ + WF NAR + W+ MV + N D
Sbjct: 121 VASFPHDGKSTGIGGGGGGVQAKLLSLLSEISNWFINARVRLWKPMVEEMYNDEFD 176
>10_07_0134 + 13289641-13290216,13290435-13290914
Length = 351
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 122 QFNVWFQNARAKWRRMVTKQENKMSD 147
Q +WFQN RA+W+ TKQ K D
Sbjct: 144 QVAIWFQNRRARWK---TKQLEKDFD 166
>04_04_0667 + 27097741-27098085,27098203-27098547
Length = 229
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 122 QFNVWFQNARAKWR 135
Q +WFQN RA+WR
Sbjct: 67 QVAIWFQNKRARWR 80
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 122 QFNVWFQNARAKWRRMVTKQENKMSD 147
Q +WFQN RA+W+ TKQ K D
Sbjct: 170 QVAIWFQNRRARWK---TKQLEKDYD 192
>02_05_0618 +
30400338-30400452,30400553-30400692,30400805-30401044,
30401157-30401693
Length = 343
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 122 QFNVWFQNARAKWRRMVTKQENKMSDK 148
Q VWFQN RA+W+ TKQ + D+
Sbjct: 117 QVAVWFQNRRARWK---TKQLERDFDR 140
>02_05_0134 + 26161904-26162776
Length = 290
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 122 QFNVWFQNARAKWR 135
Q +WFQN RA+WR
Sbjct: 105 QVAIWFQNKRARWR 118
>01_05_0213 - 19355785-19356522
Length = 245
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 171 PPHSPPYSVMGGPPSPNS 188
PP SPPYS PP P S
Sbjct: 32 PPLSPPYSPAQSPPPPTS 49
>10_06_0180 + 11526139-11526172,11526365-11527218
Length = 295
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 80 EERFHALRQMKRVVEVFKEDGA-SASRCRRGAKPQSREPATAAQFNVWFQNARAKWR 135
++R A Q++ + F+ D R R A+ P A VWFQN RA+W+
Sbjct: 55 KKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVA---VWFQNRRARWK 108
>09_06_0034 + 20370672-20371109,20371120-20371515
Length = 277
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 122 QFNVWFQNARAKWRRMVTKQE 142
Q +WFQN RA+W+ ++E
Sbjct: 70 QVAIWFQNKRARWKSKQLERE 90
>09_06_0020 -
20267190-20267612,20269086-20269495,20269573-20269747,
20270833-20271066,20271164-20271265,20271354-20272091,
20272204-20272321,20272417-20272667,20272768-20272932
Length = 871
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 84 HALRQMKRVVEVFKEDGASASRCRRGAKPQSREPATAAQFNVWFQNARAKWRRMVTKQEN 143
H +Q++ + VFKE + R + R + Q WFQN R + + + + EN
Sbjct: 129 HTPQQIQELEAVFKECPHPDEKQRM--ELSRRLNLESRQVKFWFQNRRTQMKTQIERHEN 186
Query: 144 KM 145
+
Sbjct: 187 AL 188
>11_06_0542 +
24777453-24777632,24777654-24778478,24778576-24779319,
24779422-24780354,24780456-24780938,24780969-24781082,
24781240-24781636,24781732-24782024,24782392-24782802
Length = 1459
Score = 27.1 bits (57), Expect = 9.7
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 113 QSREPATAAQFNVWFQNARAKWRRMVTKQENKMSDKCSPDGSLEMDMYHGPMGSIQSLPP 172
Q + AT+ ++ +A + RR + + + + CS + + + G MG S P
Sbjct: 190 QEHDAATSTSASIITVSADQRRRRAL--EPRSLENFCSDELTRWVKSV-GTMGRSSSSSP 246
Query: 173 HSPPYSVMGGPPSP 186
PP +++ PP+P
Sbjct: 247 SLPPIAIVPPPPTP 260
>08_02_0670 - 19877091-19877618,19880033-19880436,19880505-19880622
Length = 349
Score = 27.1 bits (57), Expect = 9.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 122 QFNVWFQNARAKWR 135
Q VWFQN RA+W+
Sbjct: 126 QVAVWFQNRRARWK 139
>01_07_0019 +
40494709-40494767,40495619-40495703,40495777-40495836,
40495934-40496044,40496127-40496204,40496276-40496347,
40496944-40497057,40498034-40498538,40499011-40499108,
40499185-40499215,40499346-40499520,40499849-40500008,
40501436-40501855,40502313-40503203
Length = 952
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 87 RQMKRVVEVFKEDGASASRCRRGAKPQSREPATAAQFNVW 126
R+++ + +++ GA++S + K REPA ++ FNVW
Sbjct: 4 RRIEERLNLYRSTGATSS-IQTIKKKGRREPAKSSCFNVW 42
>01_06_1818 - 40093327-40093384,40093501-40093580,40093661-40093946,
40095007-40095291,40095386-40095513,40095625-40096560,
40096650-40096712,40096801-40096854,40096963-40097139,
40097452-40097583,40097666-40097785,40097935-40098627,
40098760-40099158,40099263-40099271
Length = 1139
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 63 SDERLNLHSGTQPTSAYEERFHALRQMKRVVEVFKEDGASASRCRRGAKPQSREPATAAQ 122
+D + NL + ++ + V+E E G++ + + + Q
Sbjct: 1052 TDHKFNLGDQDHNSGHVRKKLRLSEEQLTVLENMYEAGSNLDQALKQGLAEKLN-IKPRQ 1110
Query: 123 FNVWFQNARAKWRRMVTKQENK 144
VWFQN RA+ + ++E K
Sbjct: 1111 VEVWFQNRRARTKHKQIEEECK 1132
>01_06_0040 -
25874308-25874611,25875743-25875822,25876764-25876996,
25877285-25877354
Length = 228
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 122 QFNVWFQNARAKWRRMVTKQENKMSDKC 149
Q VWFQN RA+ + T+ E + +C
Sbjct: 117 QVEVWFQNRRARTKLKQTEMECEYLKRC 144
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.129 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,749,705
Number of Sequences: 37544
Number of extensions: 225858
Number of successful extensions: 883
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 31
length of query: 192
length of database: 14,793,348
effective HSP length: 78
effective length of query: 114
effective length of database: 11,864,916
effective search space: 1352600424
effective search space used: 1352600424
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)
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