GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002125-TA|BGIBMGA002125-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
         (65 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY563109-1|AAS99587.1|   46|Tribolium castaneum aristaless protein.    33   2e-04
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        30   0.002
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    27   0.021
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    26   0.037
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    25   0.049
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    20   2.4  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    20   2.4  
AF452569-1|AAL57831.1|   19|Tribolium castaneum homeodomain tran...    20   2.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    20   2.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       19   3.2  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    19   3.2  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    19   3.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    19   4.2  
AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    19   4.2  
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    19   4.2  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     19   5.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    19   5.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           19   5.6  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    19   5.6  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    18   9.8  

>AY563109-1|AAS99587.1|   46|Tribolium castaneum aristaless
          protein.
          Length = 46

 Score = 33.1 bits (72), Expect = 2e-04
 Identities = 15/43 (34%), Positives = 25/43 (58%)

Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
          RT+F  +QL  ++  F+  H PD    ++L+ K GL +  +QV
Sbjct: 1  RTTFTSYQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQV 43


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 30.3 bits (65), Expect = 0.002
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 19  RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
           RT+F  HQL  ++  F     PD    ++L+Q+T L +  +QV
Sbjct: 224 RTTFTAHQLDELEKAFERTQYPDIYTREELAQRTKLTEARIQV 266


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 0.021
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 19  RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
           RT+F   QL  ++  FA    PD    ++++ K  LP+  +QV
Sbjct: 131 RTTFTRAQLDLLEGLFAKTRYPDIFMREEVAVKINLPESRVQV 173


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.8 bits (54), Expect = 0.037
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 19  RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
           RT+F   QL  +++ F     PD    ++++ K  LP+  +QV
Sbjct: 73  RTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQV 115


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 25.4 bits (53), Expect = 0.049
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 19  RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
           RT+F   QL  +K  FA N     +  +QLS + GL +  +++
Sbjct: 232 RTAFSGAQLARLKHEFAENRYLTERRRQQLSAELGLNEAQIKI 274


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
          transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 19.8 bits (39), Expect = 2.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 30 MKSYFAINHNPDAKD 44
          M SYFA ++ PD ++
Sbjct: 1  MSSYFANSYMPDMRN 15


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 2.4
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 2/22 (9%)

Query: 40  PDAKDLKQLSQKTGLPKRVLQV 61
           P     KQL+Q TGL   +LQV
Sbjct: 362 PSEDQKKQLAQDTGL--TILQV 381


>AF452569-1|AAL57831.1|   19|Tribolium castaneum homeodomain
          transcription factor Ptl protein.
          Length = 19

 Score = 19.8 bits (39), Expect = 2.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 30 MKSYFAINHNPDAKD 44
          M SYFA ++ PD ++
Sbjct: 1  MSSYFANSYMPDMRN 15


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
          protein.
          Length = 325

 Score = 19.8 bits (39), Expect = 2.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 30 MKSYFAINHNPDAKD 44
          M SYFA ++ PD ++
Sbjct: 1  MSSYFANSYMPDMRN 15


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 19.4 bits (38), Expect = 3.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 33  YFAINHNP 40
           +FA NHNP
Sbjct: 98  HFAYNHNP 105


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 19.4 bits (38), Expect = 3.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 28  RTMKSYFAINHNPD 41
           RTM+S+F+ N   D
Sbjct: 208 RTMRSFFSDNKQDD 221


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 19.4 bits (38), Expect = 3.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 28  RTMKSYFAINHNPD 41
           RTM+S+F+ N   D
Sbjct: 208 RTMRSFFSDNKQDD 221


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 19.0 bits (37), Expect = 4.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 46   KQLSQKTGLPK 56
            KQL+QK  LPK
Sbjct: 1259 KQLAQKYQLPK 1269


>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 19.0 bits (37), Expect = 4.2
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 22  FKHHQLRTMKSYFAINH 38
           +K  QLR   + + +NH
Sbjct: 92  YKDFQLRLCAALYGVNH 108


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 19.0 bits (37), Expect = 4.2
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 22  FKHHQLRTMKSYFAINH 38
           +K  QLR   + + +NH
Sbjct: 92  YKDFQLRLCAALYGVNH 108


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 18.6 bits (36), Expect = 5.6
 Identities = 8/43 (18%), Positives = 21/43 (48%)

Query: 19  RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
           RT++  HQ+  ++  F  N     +   +++    L +R +++
Sbjct: 237 RTAYTRHQILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKI 279


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 18.6 bits (36), Expect = 5.6
 Identities = 8/43 (18%), Positives = 21/43 (48%)

Query: 19  RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
           RT++  HQ+  ++  F  N     +   +++    L +R +++
Sbjct: 237 RTAYTRHQILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKI 279


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 18.6 bits (36), Expect = 5.6
 Identities = 8/43 (18%), Positives = 21/43 (48%)

Query: 19  RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
           RT++  HQ+  ++  F  N     +   +++    L +R +++
Sbjct: 237 RTAYTRHQILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKI 279


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
          protein.
          Length = 312

 Score = 18.6 bits (36), Expect = 5.6
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 18 MRTSFKHH 25
          +RTS++HH
Sbjct: 37 LRTSYQHH 44


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 17.8 bits (34), Expect = 9.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 36  INHNPDAKDLKQ 47
           ++HNP +  LKQ
Sbjct: 347 LHHNPMSHHLKQ 358


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9877
Number of Sequences: 317
Number of extensions: 230
Number of successful extensions: 20
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of query: 65
length of database: 114,650
effective HSP length: 43
effective length of query: 22
effective length of database: 101,019
effective search space:  2222418
effective search space used:  2222418
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.7 bits)
S2: 34 (17.8 bits)