GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002125-TA|BGIBMGA002125-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
         (65 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    24   2.9  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    22   8.7  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    22   8.7  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 19  RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTG 53
           + +FK   L +M      N   DA DL ++  KTG
Sbjct: 155 KKAFKERNLESMDYLMRHNEFNDAIDLNEVDIKTG 189


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 31   KSYFAINHNPDAKDLKQLSQKTGLPKRV 58
            +S +  ++NP  +    +S ++ LP+RV
Sbjct: 1489 QSSYVPDYNPSLRSTPSVSSRSTLPQRV 1516


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 22  FKHHQLRTMKSYFAINHNPDAKDLKQLS 49
           FK+  L  + S    ++ PD+ + KQLS
Sbjct: 354 FKYRHLPYLASVHPFSYLPDSTNSKQLS 381


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,707
Number of Sequences: 5004
Number of extensions: 4608
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 65
length of database: 2,362,478
effective HSP length: 45
effective length of query: 20
effective length of database: 2,137,298
effective search space: 42745960
effective search space used: 42745960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)