GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002125-TA|BGIBMGA002125-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
         (65 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0574 + 5103466-5103534,5104526-5104806,5104959-5105127           29   0.35 
04_04_1231 - 31934745-31935125,31935230-31935325,31936215-319362...    29   0.35 
08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160           28   0.82 
10_08_1025 - 22391267-22391767,22392641-22392736,22392838-223931...    27   1.4  
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442...    27   1.9  

>08_01_0574 + 5103466-5103534,5104526-5104806,5104959-5105127
          Length = 172

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 25  HQLRTMKSYFAINHNPDAKDLKQLSQKTGL 54
           HQ++ M+++F    +PD K  K+LS++ GL
Sbjct: 110 HQIQEMEAFFKECPHPDDKQRKELSRELGL 139


>04_04_1231 -
           31934745-31935125,31935230-31935325,31936215-31936277,
           31936393-31936593,31936738-31936839,31936972-31937430,
           31937524-31937712,31938325-31938442,31939033-31939307,
           31939853-31939930
          Length = 653

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 25  HQLRTMKSYFAINHNPDAKDLKQLSQKTGL 54
           HQ++ M+++F    +PD K  K+LS++ GL
Sbjct: 111 HQIQEMEAFFKECPHPDDKQRKELSRELGL 140


>08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160
          Length = 749

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 11/30 (36%), Positives = 21/30 (70%)

Query: 25  HQLRTMKSYFAINHNPDAKDLKQLSQKTGL 54
           HQ++ ++++F    +PD K  K+LS++ GL
Sbjct: 98  HQIQELEAFFKECPHPDDKQRKELSRELGL 127


>10_08_1025 -
           22391267-22391767,22392641-22392736,22392838-22393106,
           22393257-22393431,22393503-22393718,22393819-22393926,
           22394020-22394544,22394631-22394819,22394924-22395041,
           22395172-22395437,22395521-22395658
          Length = 866

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 25  HQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKR 57
           HQ++ M++ F    +PD K   +LSQ+ GL  R
Sbjct: 128 HQIQQMEALFKECPHPDDKQRLKLSQELGLKPR 160


>10_08_0106 +
           14842748-14843085,14843122-14843250,14844145-14844211,
           14847177-14847324,14847998-14848097,14848306-14848384,
           14848527-14848687,14848829-14848908,14849319-14849475,
           14849575-14849723,14849909-14850076,14850426-14850719,
           14851002-14851046,14851213-14851462,14851707-14851835,
           14852799-14853039,14853977-14854642
          Length = 1066

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 39  NPDAK-DLKQLSQKTGLPKRVLQVAIDG 65
           N DA+ D+K++   TG+PK +L    DG
Sbjct: 377 NGDARFDMKRMKPPTGIPKSMLMATPDG 404


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,128,171
Number of Sequences: 37544
Number of extensions: 23546
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55
Number of HSP's gapped (non-prelim): 5
length of query: 65
length of database: 14,793,348
effective HSP length: 45
effective length of query: 20
effective length of database: 13,103,868
effective search space: 262077360
effective search space used: 262077360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)