Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002125-TA|BGIBMGA002125-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
(65 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43) 87 2e-18
SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42) 48 1e-06
SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40) 38 0.001
SB_48493| Best HMM Match : Homeobox (HMM E-Value=6.3e-08) 37 0.003
SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.005
SB_10425| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.006
SB_41749| Best HMM Match : Homeobox (HMM E-Value=4.1e-29) 35 0.011
SB_54939| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.019
SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.019
SB_31379| Best HMM Match : Pou (HMM E-Value=0) 33 0.025
SB_47470| Best HMM Match : Pou (HMM E-Value=1.3e-22) 33 0.025
SB_21212| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.075
SB_22965| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.100
SB_49289| Best HMM Match : Homeobox (HMM E-Value=6e-30) 31 0.17
SB_31530| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.17
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32) 30 0.30
SB_16449| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.30
SB_10895| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.70
SB_47478| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 0.93
SB_21036| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.2
SB_37079| Best HMM Match : Homeobox (HMM E-Value=1.2e-28) 28 1.2
SB_6712| Best HMM Match : Homeobox (HMM E-Value=8e-06) 27 1.6
SB_54937| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 3.7
SB_47477| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 3.7
SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 3.7
SB_21452| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.9
SB_16319| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.9
SB_5495| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.5
SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09) 25 6.5
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10) 25 8.6
SB_5296| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
>SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)
Length = 511
Score = 87.0 bits (206), Expect = 2e-18
Identities = 39/44 (88%), Positives = 42/44 (95%)
Query: 18 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
+RTSFKHHQLR MK+YFA+NHNPDAKDLKQLSQKTGL KRVLQV
Sbjct: 423 VRTSFKHHQLRAMKTYFAMNHNPDAKDLKQLSQKTGLTKRVLQV 466
>SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42)
Length = 328
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 18 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
+RT+F QL+ +++ F I+ NPD +DL++++Q TGL KRV QV
Sbjct: 257 VRTTFTEDQLQILQANFNIDSNPDGQDLERIAQLTGLSKRVTQV 300
>SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40)
Length = 434
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+ K QL +KS FA P ++L+Q+TGL RV+QV
Sbjct: 157 RTTIKAKQLEALKSTFAATPKPSRNIREKLAQETGLNMRVIQV 199
>SB_48493| Best HMM Match : Homeobox (HMM E-Value=6.3e-08)
Length = 121
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 18 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQVAI 63
+RTSF QL ++S FA H P + QL+ TGLP+ +QV +
Sbjct: 26 VRTSFADWQLCALESAFAQTHYPPIYERDQLAGYTGLPEERIQVVM 71
>SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F H QL ++ F+ H PD + +QL+ T L + +QV
Sbjct: 71 RTAFTHQQLTALEKVFSKTHYPDVEVREQLATSTNLQEARIQV 113
>SB_10425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 293
Score = 35.5 bits (78), Expect = 0.006
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F H QL+ ++S F+ H PD +QL+ +P+ +QV
Sbjct: 60 RTAFTHQQLQILESTFSKTHYPDVVMREQLAAYINIPESRIQV 102
>SB_41749| Best HMM Match : Homeobox (HMM E-Value=4.1e-29)
Length = 269
Score = 34.7 bits (76), Expect = 0.011
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
R +F Q+ M+ F +NH PD +LS++TGL + +Q+
Sbjct: 78 RATFDKAQIFQMERVFLLNHYPDVAARSELSRRTGLSESQVQI 120
>SB_54939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 33.9 bits (74), Expect = 0.019
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 18 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
MRT F +QL+ +++ F H PD +QL+ LP+ +QV
Sbjct: 152 MRTCFTPYQLQVLENTFCNTHYPDVMLREQLASYVNLPEARIQV 195
>SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1267
Score = 33.9 bits (74), Expect = 0.019
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F QL T++ F+ H PD +QL+ T LP+ +QV
Sbjct: 1112 RTTFNQFQLDTLERAFSRTHYPDVLLREQLAVYTNLPESRIQV 1154
>SB_31379| Best HMM Match : Pou (HMM E-Value=0)
Length = 310
Score = 33.5 bits (73), Expect = 0.025
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RTS + R++++YFA+N P + + +++K L K V++V
Sbjct: 251 RTSIGAAEKRSLEAYFAMNPRPSSDKIASIAEKLDLSKNVVRV 293
>SB_47470| Best HMM Match : Pou (HMM E-Value=1.3e-22)
Length = 441
Score = 33.5 bits (73), Expect = 0.025
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RTSF + LR + S+F N P + ++ Q++ K GL ++V
Sbjct: 238 RTSFSNEALRLLISHFEQNPKPSSSEIAQIASKLGLEPVTVRV 280
>SB_21212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 31.9 bits (69), Expect = 0.075
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 60
RT+F H QL+ M++YF N P + + L++K + + LQ
Sbjct: 81 RTTFTHDQLQLMEAYFHNNRYPGIEQREGLAEKIQVSESRLQ 122
>SB_22965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 31.5 bits (68), Expect = 0.100
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT F ++QL ++ F +H PD + LS K LP+ +Q+
Sbjct: 100 RTIFTNYQLEELEKAFKESHYPDVYARENLSLKIDLPEDRIQI 142
>SB_49289| Best HMM Match : Homeobox (HMM E-Value=6e-30)
Length = 285
Score = 30.7 bits (66), Expect = 0.17
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
R +F QLR ++ F H PDA + L++K GL + +Q+
Sbjct: 120 RKNFTGDQLRDLERLFEQTHYPDAMTREGLAKKLGLSEARVQI 162
>SB_31530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 661
Score = 30.7 bits (66), Expect = 0.17
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQVAI 63
RT++K Q+ ++S F+IN P + K L+ + GL +QV +
Sbjct: 419 RTTYKRWQIEELESAFSINPYPTSLHKKALAVRLGLRDSRVQVRV 463
>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
Length = 1168
Score = 29.9 bits (64), Expect = 0.30
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F +QL M+ F H PD +QL+ + L + +QV
Sbjct: 408 RTTFTAYQLEEMERVFQKTHYPDVYTREQLALRCALTEARVQV 450
>SB_16449| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 29.9 bits (64), Expect = 0.30
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F QL ++ F +H PD ++L+ K LP+ +QV
Sbjct: 89 RTTFTTFQLHELERAFEKSHYPDVYTREELALKISLPEVRVQV 131
>SB_10895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 28.7 bits (61), Expect = 0.70
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F +QL ++ FA H PD + L+ K L + +QV
Sbjct: 290 RTTFTSYQLEELERAFAKTHYPDVFTREALAVKIDLTEARVQV 332
>SB_47478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 28.3 bits (60), Expect = 0.93
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F +QL ++ FA PD ++++ K LP+ +QV
Sbjct: 47 RTTFTKNQLEVLEELFAKTRYPDIFMREEVAIKINLPESRVQV 89
>SB_21036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 243
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F QL+ ++ F H PD ++L+ K + + +QV
Sbjct: 72 RTTFTKQQLQELEKVFEKKHYPDIALREELAAKINISEARIQV 114
>SB_37079| Best HMM Match : Homeobox (HMM E-Value=1.2e-28)
Length = 246
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F +QL ++ FA PD ++++ K LP+ +QV
Sbjct: 62 RTTFTKNQLEILEELFAKTRYPDIFMREEVAIKINLPESRVQV 104
>SB_6712| Best HMM Match : Homeobox (HMM E-Value=8e-06)
Length = 169
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPK 56
RT F QL ++ F H PD K + ++ + GLP+
Sbjct: 110 RTVFSTEQLAILEEGFQKQHFPDNKLRQAIATRAGLPE 147
>SB_54937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 60
RT+F QL ++ F +H PD ++L+ K + + +Q
Sbjct: 113 RTTFTPDQLEMLEKEFEKSHYPDVATREELANKIDMSEARVQ 154
>SB_47477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 60
RT+F +QL ++ FA PD ++++ K LP+ +Q
Sbjct: 443 RTTFTKNQLEILEELFAKTRYPDIFMREEVAIKINLPESRVQ 484
>SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 60
RT+F Q+ ++ F H PD + L+Q+ L + +Q
Sbjct: 332 RTNFTDEQIEKLEKVFEKTHYPDVFTREGLAQQVNLSEARIQ 373
>SB_21452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F +Q+ ++ F PD ++L+ K GL + +QV
Sbjct: 67 RTTFSQYQIEELERAFDKAPYPDVFAREELAAKLGLTEARIQV 109
>SB_16319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F QL +++ F+ + PD +QL+++ L + +QV
Sbjct: 162 RTTFSKLQLDSLEEAFSRSQYPDVFTREQLAKRINLNEARVQV 204
>SB_5495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT + QLR M+ F + P + LS++ G+ + LQV
Sbjct: 25 RTFYTDSQLRRMEEVFERDRFPGIAARESLSEELGIKEDRLQV 67
>SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09)
Length = 1111
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 25 HQLRTMKSYFAINHNPDAKDLKQLSQ 50
H+L K+ ++N+N AK+L++L Q
Sbjct: 917 HKLTLQKARQSLNYNRGAKELEELKQ 942
>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
Length = 1163
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/33 (27%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 32 SYFAINHNPDAKDLKQLSQKTGLPKRVLQVAID 64
+++ + H+PD++ ++ + G P RV Q+ +D
Sbjct: 238 THYTVEHSPDSRIWTEIKDELGNP-RVRQIWVD 269
>SB_5296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT F +QL ++ + PD + + L+Q+ G+ + +QV
Sbjct: 224 RTKFTAYQLEQLEDAYQKAKYPDVQARETLAQRLGVAESRVQV 266
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.132 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,414,995
Number of Sequences: 59808
Number of extensions: 30131
Number of successful extensions: 165
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 31
length of query: 65
length of database: 16,821,457
effective HSP length: 44
effective length of query: 21
effective length of database: 14,189,905
effective search space: 297988005
effective search space used: 297988005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)
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