Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002125-TA|BGIBMGA002125-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
(65 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81482-5|CAB03956.3| 409|Caenorhabditis elegans Hypothetical pr... 83 2e-17
U72211-1|AAB97099.1| 409|Caenorhabditis elegans putative transc... 83 2e-17
U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative transc... 46 3e-06
U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain fami... 46 3e-06
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ... 42 4e-05
Z80221-2|CAB02310.1| 405|Caenorhabditis elegans Hypothetical pr... 37 0.002
X54355-1|CAA38240.1| 382|Caenorhabditis elegans lin-11 protein ... 37 0.002
U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein. 36 0.004
AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain fa... 36 0.004
Z49937-5|CAC42288.1| 296|Caenorhabditis elegans Hypothetical pr... 33 0.025
Z49937-4|CAC42287.1| 269|Caenorhabditis elegans Hypothetical pr... 33 0.025
Z49937-3|CAA90186.2| 455|Caenorhabditis elegans Hypothetical pr... 33 0.025
U31537-2|AAA82992.1| 261|Caenorhabditis elegans male abnormal-1... 33 0.025
U31537-1|AAA82991.1| 455|Caenorhabditis elegans variable abnorm... 33 0.025
U29184-1|AAC47542.1| 296|Caenorhabditis elegans MAB-18 protein. 33 0.025
U29145-1|AAC47541.1| 284|Caenorhabditis elegans MAB-18 protein. 33 0.025
AL132858-4|CAB60479.2| 338|Caenorhabditis elegans Hypothetical ... 31 0.076
AL132858-3|CAB60478.2| 391|Caenorhabditis elegans Hypothetical ... 31 0.076
AF381629-1|AAL12002.1| 223|Caenorhabditis elegans homeodomain p... 31 0.076
AF381628-1|AAL12001.1| 372|Caenorhabditis elegans homeodomain p... 31 0.076
AF381627-1|AAL12000.1| 332|Caenorhabditis elegans homeodomain p... 31 0.076
Z81054-5|CAE17755.1| 313|Caenorhabditis elegans Hypothetical pr... 30 0.17
Z81054-4|CAB02885.3| 321|Caenorhabditis elegans Hypothetical pr... 30 0.17
U41624-2|AAF99943.2| 351|Caenorhabditis elegans C.elegans homeo... 30 0.17
M20244-1|AAA28108.1| 313|Caenorhabditis elegans protein ( C.ele... 30 0.17
L02877-1|AAA50614.1| 321|Caenorhabditis elegans homeoprotein pr... 30 0.17
AF244368-1|AAF77181.1| 351|Caenorhabditis elegans LIM homeobox ... 30 0.17
Z81143-3|CAB03519.2| 276|Caenorhabditis elegans Hypothetical pr... 29 0.53
Z95623-1|CAB09133.1| 314|Caenorhabditis elegans Hypothetical pr... 28 0.93
Z68008-6|CAA92001.1| 362|Caenorhabditis elegans Hypothetical pr... 28 0.93
Z75711-7|CAB00031.2| 380|Caenorhabditis elegans Hypothetical pr... 27 1.2
Z70780-17|CAA94830.3| 264|Caenorhabditis elegans Hypothetical p... 27 1.2
Z70754-11|CAA94780.3| 264|Caenorhabditis elegans Hypothetical p... 27 1.2
AF286377-1|AAG10298.1| 380|Caenorhabditis elegans POU family II... 27 1.2
AF038608-13|AAC25819.1| 253|Caenorhabditis elegans Hypothetical... 27 1.2
Z48783-8|CAA88702.2| 308|Caenorhabditis elegans Hypothetical pr... 27 1.6
Z48582-6|CAA88468.2| 308|Caenorhabditis elegans Hypothetical pr... 27 1.6
U39740-3|AAA80426.2| 542|Caenorhabditis elegans C.elegans homeo... 27 2.2
U39740-2|AAM69077.1| 540|Caenorhabditis elegans C.elegans homeo... 27 2.2
U16367-1|AAA52203.1| 542|Caenorhabditis elegans CEH-18 protein. 27 2.2
AF272397-1|AAF76229.1| 237|Caenorhabditis elegans CEH-17 protein. 27 2.2
AF003151-5|AAK18908.1| 237|Caenorhabditis elegans C.elegans hom... 27 2.2
Z73422-5|CAE54882.1| 323|Caenorhabditis elegans Hypothetical pr... 26 2.8
Z73422-4|CAA97770.1| 319|Caenorhabditis elegans Hypothetical pr... 26 2.8
Z47072-1|CAA87368.1| 252|Caenorhabditis elegans Hypothetical pr... 26 2.8
X64904-1|CAA46108.1| 184|Caenorhabditis elegans unc-4 protein. 26 2.8
X52812-1|CAB57216.1| 66|Caenorhabditis elegans protein ( Caeno... 26 2.8
U50184-2|AAB93323.1| 344|Caenorhabditis elegans C.elegans homeo... 26 2.8
U19995-1|AAA93063.1| 344|Caenorhabditis elegans ceh-10 protein. 26 2.8
L37867-1|AAA63155.1| 319|Caenorhabditis elegans homeodomain pro... 26 2.8
AY246429-1|AAO91836.1| 209|Caenorhabditis elegans homeodomain p... 26 3.8
AY246428-1|AAO91835.1| 209|Caenorhabditis elegans homeodomain p... 26 3.8
AF003137-4|AAB93639.2| 209|Caenorhabditis elegans C.elegans hom... 26 3.8
Z81583-5|CAB04673.1| 574|Caenorhabditis elegans Hypothetical pr... 25 5.0
Z81046-3|CAB02821.1| 257|Caenorhabditis elegans Hypothetical pr... 25 5.0
AF098993-8|AAC67465.2| 142|Caenorhabditis elegans Pterin carbin... 25 5.0
EF473216-1|ABQ42568.1| 262|Caenorhabditis elegans endoplasmic r... 25 6.6
AF039719-9|AAB96749.3| 262|Caenorhabditis elegans Hypothetical ... 25 6.6
Z49908-3|CAA90094.2| 382|Caenorhabditis elegans Hypothetical pr... 25 8.7
>Z81482-5|CAB03956.3| 409|Caenorhabditis elegans Hypothetical
protein C40H5.5 protein.
Length = 409
Score = 83.0 bits (196), Expect = 2e-17
Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 18 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
MRTSFKHHQLR MK+YFA+NHNPDAKDLKQL+ KT L KRVLQV
Sbjct: 295 MRTSFKHHQLRAMKTYFALNHNPDAKDLKQLAAKTNLTKRVLQV 338
>U72211-1|AAB97099.1| 409|Caenorhabditis elegans putative
transcription factor TTX-3 protein.
Length = 409
Score = 83.0 bits (196), Expect = 2e-17
Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 18 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
MRTSFKHHQLR MK+YFA+NHNPDAKDLKQL+ KT L KRVLQV
Sbjct: 295 MRTSFKHHQLRAMKTYFALNHNPDAKDLKQLAAKTNLTKRVLQV 338
>U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative
transcription factor LIM-4 protein.
Length = 355
Score = 46.0 bits (104), Expect = 3e-06
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 18 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
+RT+F QL +++YF + NPD DL++++ TGL KRV QV
Sbjct: 242 VRTTFAEDQLSVLQTYFNRDSNPDGADLEKIASMTGLSKRVTQV 285
>U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain family
protein 4 protein.
Length = 355
Score = 46.0 bits (104), Expect = 3e-06
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 18 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
+RT+F QL +++YF + NPD DL++++ TGL KRV QV
Sbjct: 242 VRTTFAEDQLSVLQTYFNRDSNPDGADLEKIASMTGLSKRVTQV 285
>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
protein ZC123.3 protein.
Length = 1623
Score = 42.3 bits (95), Expect = 4e-05
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 60
RT QL+ ++ YF IN++P +K++SQK LP++V++
Sbjct: 867 RTRITDDQLKVLRQYFNINNSPSEAQIKEMSQKASLPEKVIK 908
Score = 33.5 bits (73), Expect = 0.019
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT F QLRT++ +F P DL+ LS+K L RV+ V
Sbjct: 1043 RTRFTDFQLRTLQQFFDKQAYPKDDDLEALSKKLQLSPRVIVV 1085
Score = 29.9 bits (64), Expect = 0.23
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT Q++ MKS F P + + L ++ GL KRV+QV
Sbjct: 1350 RTHLTPMQVQMMKSVFNEYKTPSMAECELLGKEVGLHKRVVQV 1392
>Z80221-2|CAB02310.1| 405|Caenorhabditis elegans Hypothetical
protein ZC247.3 protein.
Length = 405
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+ K QL T+K+ FA P +QL+ +TGL RV+QV
Sbjct: 245 RTTIKAKQLETLKNAFAATPKPTRHIREQLAAETGLNMRVIQV 287
>X54355-1|CAA38240.1| 382|Caenorhabditis elegans lin-11 protein
protein.
Length = 382
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+ K QL T+K+ FA P +QL+ +TGL RV+QV
Sbjct: 222 RTTIKAKQLETLKNAFAATPKPTRHIREQLAAETGLNMRVIQV 264
>U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein.
Length = 452
Score = 35.9 bits (79), Expect = 0.004
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 18 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
+RT +QL+ ++ ++IN PDA ++L + TGL RV++V
Sbjct: 268 VRTVLNENQLKILRDCYSINSRPDATLKERLVEMTGLSARVIRV 311
>AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain
family protein 7 protein.
Length = 452
Score = 35.9 bits (79), Expect = 0.004
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 18 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
+RT +QL+ ++ ++IN PDA ++L + TGL RV++V
Sbjct: 268 VRTVLNENQLKILRDCYSINSRPDATLKERLVEMTGLSARVIRV 311
>Z49937-5|CAC42288.1| 296|Caenorhabditis elegans Hypothetical
protein F14F3.1c protein.
Length = 296
Score = 33.1 bits (72), Expect = 0.025
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RTSF Q+ +++ F H PD ++L+QK LP+ +QV
Sbjct: 62 RTSFTQVQIESLEKEFERTHYPDVFARERLAQKIQLPEARIQV 104
>Z49937-4|CAC42287.1| 269|Caenorhabditis elegans Hypothetical
protein F14F3.1b protein.
Length = 269
Score = 33.1 bits (72), Expect = 0.025
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RTSF Q+ +++ F H PD ++L+QK LP+ +QV
Sbjct: 35 RTSFTQVQIESLEKEFERTHYPDVFARERLAQKIQLPEARIQV 77
>Z49937-3|CAA90186.2| 455|Caenorhabditis elegans Hypothetical
protein F14F3.1a protein.
Length = 455
Score = 33.1 bits (72), Expect = 0.025
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RTSF Q+ +++ F H PD ++L+QK LP+ +QV
Sbjct: 221 RTSFTQVQIESLEKEFERTHYPDVFARERLAQKIQLPEARIQV 263
>U31537-2|AAA82992.1| 261|Caenorhabditis elegans male abnormal-18
protein.
Length = 261
Score = 33.1 bits (72), Expect = 0.025
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RTSF Q+ +++ F H PD ++L+QK LP+ +QV
Sbjct: 27 RTSFTQVQIESLEKEFERTHYPDVFARERLAQKIQLPEARIQV 69
>U31537-1|AAA82991.1| 455|Caenorhabditis elegans variable
abnormal-3 protein.
Length = 455
Score = 33.1 bits (72), Expect = 0.025
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RTSF Q+ +++ F H PD ++L+QK LP+ +QV
Sbjct: 221 RTSFTQVQIESLEKEFERTHYPDVFARERLAQKIQLPEARIQV 263
>U29184-1|AAC47542.1| 296|Caenorhabditis elegans MAB-18 protein.
Length = 296
Score = 33.1 bits (72), Expect = 0.025
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RTSF Q+ +++ F H PD ++L+QK LP+ +QV
Sbjct: 62 RTSFTQVQIESLEKEFERTHYPDVFARERLAQKIQLPEARIQV 104
>U29145-1|AAC47541.1| 284|Caenorhabditis elegans MAB-18 protein.
Length = 284
Score = 33.1 bits (72), Expect = 0.025
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RTSF Q+ +++ F H PD ++L+QK LP+ +QV
Sbjct: 50 RTSFTQVQIESLEKEFERTHYPDVFARERLAQKIQLPEARIQV 92
>AL132858-4|CAB60479.2| 338|Caenorhabditis elegans Hypothetical
protein Y113G7A.6b protein.
Length = 338
Score = 31.5 bits (68), Expect = 0.076
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F +QL ++SYF PD + ++ K LP+ +QV
Sbjct: 150 RTTFTRNQLEILESYFVKTRYPDIFMREDMAHKIQLPESRVQV 192
>AL132858-3|CAB60478.2| 391|Caenorhabditis elegans Hypothetical
protein Y113G7A.6a protein.
Length = 391
Score = 31.5 bits (68), Expect = 0.076
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F +QL ++SYF PD + ++ K LP+ +QV
Sbjct: 203 RTTFTRNQLEILESYFVKTRYPDIFMREDMAHKIQLPESRVQV 245
>AF381629-1|AAL12002.1| 223|Caenorhabditis elegans homeodomain
protein TTX-1 protein.
Length = 223
Score = 31.5 bits (68), Expect = 0.076
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F +QL ++SYF PD + ++ K LP+ +QV
Sbjct: 166 RTTFTRNQLEILESYFVKTRYPDIFMREDMAHKIQLPESRVQV 208
>AF381628-1|AAL12001.1| 372|Caenorhabditis elegans homeodomain
protein TTX-1 protein.
Length = 372
Score = 31.5 bits (68), Expect = 0.076
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F +QL ++SYF PD + ++ K LP+ +QV
Sbjct: 184 RTTFTRNQLEILESYFVKTRYPDIFMREDMAHKIQLPESRVQV 226
>AF381627-1|AAL12000.1| 332|Caenorhabditis elegans homeodomain
protein TTX-1 protein.
Length = 332
Score = 31.5 bits (68), Expect = 0.076
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F +QL ++SYF PD + ++ K LP+ +QV
Sbjct: 144 RTTFTRNQLEILESYFVKTRYPDIFMREDMAHKIQLPESRVQV 186
>Z81054-5|CAE17755.1| 313|Caenorhabditis elegans Hypothetical
protein F01D4.6b protein.
Length = 313
Score = 30.3 bits (65), Expect = 0.17
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+ K +QL + F+ P +L+ +TGL RV+QV
Sbjct: 213 RTTIKQNQLDVLNEMFSNTPKPSKHARAKLALETGLSMRVIQV 255
>Z81054-4|CAB02885.3| 321|Caenorhabditis elegans Hypothetical
protein F01D4.6a protein.
Length = 321
Score = 30.3 bits (65), Expect = 0.17
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+ K +QL + F+ P +L+ +TGL RV+QV
Sbjct: 221 RTTIKQNQLDVLNEMFSNTPKPSKHARAKLALETGLSMRVIQV 263
>U41624-2|AAF99943.2| 351|Caenorhabditis elegans C.elegans homeobox
protein 14 protein.
Length = 351
Score = 30.3 bits (65), Expect = 0.17
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+ L T+K + + P +QL+ +TGL RV+QV
Sbjct: 184 RTTISAKSLETLKQAYQTSSKPARHVREQLASETGLDMRVVQV 226
>M20244-1|AAA28108.1| 313|Caenorhabditis elegans protein (
C.elegans mec-3 geneencoding differentiation of the six
touch receptor neurons,complete cds. ).
Length = 313
Score = 30.3 bits (65), Expect = 0.17
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+ K +QL + F+ P +L+ +TGL RV+QV
Sbjct: 213 RTTIKQNQLDVLNEMFSNTPKPSKHARAKLALETGLSMRVIQV 255
>L02877-1|AAA50614.1| 321|Caenorhabditis elegans homeoprotein
protein.
Length = 321
Score = 30.3 bits (65), Expect = 0.17
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+ K +QL + F+ P +L+ +TGL RV+QV
Sbjct: 221 RTTIKQNQLDVLNEMFSNTPKPSKHARAKLALETGLSMRVIQV 263
>AF244368-1|AAF77181.1| 351|Caenorhabditis elegans LIM homeobox
protein CEH-14 protein.
Length = 351
Score = 30.3 bits (65), Expect = 0.17
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+ L T+K + + P +QL+ +TGL RV+QV
Sbjct: 184 RTTISAKSLETLKQAYQTSSKPARHVREQLASETGLDMRVVQV 226
>Z81143-3|CAB03519.2| 276|Caenorhabditis elegans Hypothetical
protein ZK265.4 protein.
Length = 276
Score = 28.7 bits (61), Expect = 0.53
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F QL +++ F H PD + L+ K LP+ +QV
Sbjct: 64 RTTFTTFQLHALEAAFDKTHYPDVYARETLAAKVQLPEVRVQV 106
>Z95623-1|CAB09133.1| 314|Caenorhabditis elegans Hypothetical
protein Y53C12C.1 protein.
Length = 314
Score = 27.9 bits (59), Expect = 0.93
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
R++F + QL++++ F + P + L ++T LP+ +QV
Sbjct: 207 RSTFTNEQLQSLEEVFLRDPYPSPNERADLVKRTNLPEARIQV 249
>Z68008-6|CAA92001.1| 362|Caenorhabditis elegans Hypothetical
protein R08B4.2 protein.
Length = 362
Score = 27.9 bits (59), Expect = 0.93
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F QL ++ FA H PD ++L+ + L + +QV
Sbjct: 121 RTTFSAFQLDELEKVFARTHYPDVFTREELATRVQLTEARVQV 163
>Z75711-7|CAB00031.2| 380|Caenorhabditis elegans Hypothetical
protein K02B12.1 protein.
Length = 380
Score = 27.5 bits (58), Expect = 1.2
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RTS + + ++ +F N P+A+++ Q++ + L K V++V
Sbjct: 285 RTSIEVNVKSRLEFHFQSNQKPNAQEITQVAMELQLEKEVVRV 327
>Z70780-17|CAA94830.3| 264|Caenorhabditis elegans Hypothetical
protein F58E6.10 protein.
Length = 264
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F QL+ + + F +H PD ++L++ T L + +QV
Sbjct: 89 RTTFTQEQLQELDAAFQKSHYPDIYVREELARITKLNEARIQV 131
>Z70754-11|CAA94780.3| 264|Caenorhabditis elegans Hypothetical
protein F58E6.10 protein.
Length = 264
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F QL+ + + F +H PD ++L++ T L + +QV
Sbjct: 89 RTTFTQEQLQELDAAFQKSHYPDIYVREELARITKLNEARIQV 131
>AF286377-1|AAG10298.1| 380|Caenorhabditis elegans POU family III
homeodomain proteinCEH-6 protein.
Length = 380
Score = 27.5 bits (58), Expect = 1.2
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RTS + + ++ +F N P+A+++ Q++ + L K V++V
Sbjct: 285 RTSIEVNVKSRLEFHFQSNQKPNAQEITQVAMELQLEKEVVRV 327
>AF038608-13|AAC25819.1| 253|Caenorhabditis elegans Hypothetical
protein C09G12.1 protein.
Length = 253
Score = 27.5 bits (58), Expect = 1.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 18 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
+RT+F +QL ++ F PD + + L ++T L + +QV
Sbjct: 94 LRTAFSENQLELLEEAFLKCQYPDVQQRETLGKQTELAEARIQV 137
>Z48783-8|CAA88702.2| 308|Caenorhabditis elegans Hypothetical
protein F27E5.2 protein.
Length = 308
Score = 27.1 bits (57), Expect = 1.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGL 54
RTSF QL +++ F + P A + +S++TGL
Sbjct: 191 RTSFTAEQLDVLENAFRADTYPHANARESISKETGL 226
>Z48582-6|CAA88468.2| 308|Caenorhabditis elegans Hypothetical
protein F27E5.2 protein.
Length = 308
Score = 27.1 bits (57), Expect = 1.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGL 54
RTSF QL +++ F + P A + +S++TGL
Sbjct: 191 RTSFTAEQLDVLENAFRADTYPHANARESISKETGL 226
>U39740-3|AAA80426.2| 542|Caenorhabditis elegans C.elegans homeobox
protein 18,isoform a protein.
Length = 542
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+ +Q + ++FA+N PD + ++ L + V++V
Sbjct: 425 RTNLDMNQRNALDTFFALNPRPDHDKMTDIANSLELDRDVVRV 467
>U39740-2|AAM69077.1| 540|Caenorhabditis elegans C.elegans homeobox
protein 18,isoform b protein.
Length = 540
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+ +Q + ++FA+N PD + ++ L + V++V
Sbjct: 423 RTNLDMNQRNALDTFFALNPRPDHDKMTDIANSLELDRDVVRV 465
>U16367-1|AAA52203.1| 542|Caenorhabditis elegans CEH-18 protein.
Length = 542
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+ +Q + ++FA+N PD + ++ L + V++V
Sbjct: 425 RTNLDMNQRNALDTFFALNPRPDHDKMTDIANSLELDRDVVRV 467
>AF272397-1|AAF76229.1| 237|Caenorhabditis elegans CEH-17 protein.
Length = 237
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 18 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
+RT+F QL+ ++ F H PD ++++ + L + +QV
Sbjct: 152 IRTTFTSGQLKELERSFCETHYPDIYTREEIAMRIDLTEARVQV 195
>AF003151-5|AAK18908.1| 237|Caenorhabditis elegans C.elegans
homeobox protein 17 protein.
Length = 237
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 18 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
+RT+F QL+ ++ F H PD ++++ + L + +QV
Sbjct: 152 IRTTFTSGQLKELERSFCETHYPDIYTREEIAMRIDLTEARVQV 195
>Z73422-5|CAE54882.1| 323|Caenorhabditis elegans Hypothetical
protein B0564.10b protein.
Length = 323
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPD 41
RT F HQL ++++F+ N PD
Sbjct: 116 RTHFTSHQLTELENWFSRNRYPD 138
>Z73422-4|CAA97770.1| 319|Caenorhabditis elegans Hypothetical
protein B0564.10a protein.
Length = 319
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPD 41
RT F HQL ++++F+ N PD
Sbjct: 116 RTHFTSHQLTELENWFSRNRYPD 138
>Z47072-1|CAA87368.1| 252|Caenorhabditis elegans Hypothetical
protein F26C11.2 protein.
Length = 252
Score = 26.2 bits (55), Expect = 2.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F QL ++S F +H PD + L+ + L + +QV
Sbjct: 92 RTNFSGWQLEELESAFEASHYPDVFMREALAMRLDLLESRVQV 134
>X64904-1|CAA46108.1| 184|Caenorhabditis elegans unc-4 protein.
Length = 184
Score = 26.2 bits (55), Expect = 2.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT+F QL ++S F +H PD + L+ + L + +QV
Sbjct: 56 RTNFSGWQLEELESAFEASHYPDVFMREALAMRLDLLESRVQV 98
>X52812-1|CAB57216.1| 66|Caenorhabditis elegans protein (
Caenorhabditis elegansceh-10 gene, unknown homeobox. ).
Length = 66
Score = 26.2 bits (55), Expect = 2.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT F +Q+ ++ F +H PD + L+ KT L + +QV
Sbjct: 11 RTIFTQYQIDELEKAFQDSHYPDIYAREVLAGKTELQEDRIQV 53
>U50184-2|AAB93323.1| 344|Caenorhabditis elegans C.elegans homeobox
protein 10 protein.
Length = 344
Score = 26.2 bits (55), Expect = 2.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT F +Q+ ++ F +H PD + L+ KT L + +QV
Sbjct: 140 RTIFTQYQIDELEKAFQDSHYPDIYAREVLAGKTELQEDRIQV 182
>U19995-1|AAA93063.1| 344|Caenorhabditis elegans ceh-10 protein.
Length = 344
Score = 26.2 bits (55), Expect = 2.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RT F +Q+ ++ F +H PD + L+ KT L + +QV
Sbjct: 140 RTIFTQYQIDELEKAFQDSHYPDIYAREVLAGKTELQEDRIQV 182
>L37867-1|AAA63155.1| 319|Caenorhabditis elegans homeodomain
protein protein.
Length = 319
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPD 41
RT F HQL ++++F+ N PD
Sbjct: 116 RTHFTSHQLTELENWFSRNRYPD 138
>AY246429-1|AAO91836.1| 209|Caenorhabditis elegans homeodomain
protein CEH-2 protein.
Length = 209
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 18 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
+RT+F QL ++ F NH + KQL+ K L + ++V
Sbjct: 129 IRTAFSASQLIQLEKAFEGNHYVVGNERKQLAAKLSLTETQVKV 172
>AY246428-1|AAO91835.1| 209|Caenorhabditis elegans homeodomain
protein CEH-2 protein.
Length = 209
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 18 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
+RT+F QL ++ F NH + KQL+ K L + ++V
Sbjct: 129 IRTAFSASQLIQLEKAFEGNHYVVGNERKQLAAKLSLTETQVKV 172
>AF003137-4|AAB93639.2| 209|Caenorhabditis elegans C.elegans
homeobox protein 2 protein.
Length = 209
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 18 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
+RT+F QL ++ F NH + KQL+ K L + ++V
Sbjct: 129 IRTAFSASQLIQLEKAFEGNHYVVGNERKQLAAKLSLTETQVKV 172
>Z81583-5|CAB04673.1| 574|Caenorhabditis elegans Hypothetical
protein T02G6.5 protein.
Length = 574
Score = 25.4 bits (53), Expect = 5.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 36 INHNPDAKDLKQLSQKTGLPKRVLQVAIDG 65
+N NPDAK L+ + P+R QV DG
Sbjct: 506 VNANPDAKMLRGIVNYAWHPRRRPQVFRDG 535
>Z81046-3|CAB02821.1| 257|Caenorhabditis elegans Hypothetical
protein C37E2.4 protein.
Length = 257
Score = 25.4 bits (53), Expect = 5.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
RTSF QL ++ F PD + L++ LP +QV
Sbjct: 59 RTSFNRGQLDQLEKVFRETQYPDVHRREALAKAINLPDGRVQV 101
>AF098993-8|AAC67465.2| 142|Caenorhabditis elegans Pterin
carbinolamine dehydrataseprotein 1 protein.
Length = 142
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 18 MRTSFKH--HQLRTMKSYFAINHNPDAKDLKQLSQKTGL 54
M +S+ H +LRT SY +++H P + S G+
Sbjct: 1 MHSSYSHFLQRLRTSVSYLSVSHFPSTSSHRLFSTTIGV 39
>EF473216-1|ABQ42568.1| 262|Caenorhabditis elegans endoplasmic
reticulum-like protein protein.
Length = 262
Score = 25.0 bits (52), Expect = 6.6
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 25 HQLRTMKSYF-----AINHNPDAKDLKQLSQKTGLPKRVLQVAID 64
H+LR ++ Y AI HN +K + P++V Q AID
Sbjct: 126 HELRCLREYLMLALEAIMHNHRQMMVKHVQNVRERPRQVSQAAID 170
>AF039719-9|AAB96749.3| 262|Caenorhabditis elegans Hypothetical
protein K04F10.3 protein.
Length = 262
Score = 25.0 bits (52), Expect = 6.6
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 25 HQLRTMKSYF-----AINHNPDAKDLKQLSQKTGLPKRVLQVAID 64
H+LR ++ Y AI HN +K + P++V Q AID
Sbjct: 126 HELRCLREYLMLALEAIMHNHRQMMVKHVQNVRERPRQVSQAAID 170
>Z49908-3|CAA90094.2| 382|Caenorhabditis elegans Hypothetical
protein C07E3.3 protein.
Length = 382
Score = 24.6 bits (51), Expect = 8.7
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 21 SFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQVAID 64
S KH +YFA+ + + +Q S T +R QV ID
Sbjct: 105 SMKHASPSDPATYFALKPMTEVNEGRQFSIPTSSTRRYDQVPID 148
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.321 0.132 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,042,819
Number of Sequences: 27539
Number of extensions: 23818
Number of successful extensions: 127
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 61
length of query: 65
length of database: 12,573,161
effective HSP length: 45
effective length of query: 20
effective length of database: 11,333,906
effective search space: 226678120
effective search space used: 226678120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)
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