GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002125-TA|BGIBMGA002125-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
         (65 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    27   0.024
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    26   0.032
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   1.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   1.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   3.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    19   3.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   6.4  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 26.6 bits (56), Expect = 0.024
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
          RT+F   QL  +K  FA N     +  +QLS+  GL +  +++
Sbjct: 24 RTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQIKI 66


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 26.2 bits (55), Expect = 0.032
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 19 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQV 61
          RT+F   QL  +K  FA N     +  +QLS+  GL +  +++
Sbjct: 24 RTAFSGEQLARLKREFAENRYLTERRRQQLSRDLGLNEAQIKI 66


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 1.2
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 24  HHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQVAID 64
           HHQ+   +S + +  NPD ++ +      G   R LQ   D
Sbjct: 78  HHQVLYQQSPYLMYENPD-EEKRYQEHPNGKILRELQTDYD 117


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 1.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)

Query: 35  AINHNPDAKDL 45
           AI H PD KDL
Sbjct: 132 AILHRPDTKDL 142


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.4 bits (38), Expect = 3.7
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 18  MRTSFKHHQLRTMKSYFAINHNPD 41
           +  ++K HQ+R  K      H  D
Sbjct: 843 IEVAYKKHQIRKQKKMELARHAAD 866


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
          protein.
          Length = 352

 Score = 19.4 bits (38), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 30 MKSYFAINHNPDAKD 44
          M SYFA ++ PD ++
Sbjct: 1  MSSYFANSYIPDLRN 15


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 18.6 bits (36), Expect = 6.4
 Identities = 7/34 (20%), Positives = 18/34 (52%)

Query: 21  SFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGL 54
           + + H++R    +  +  NP    L+++++ T L
Sbjct: 693 TMESHEVRCTAVFLLMKTNPPLSMLQRMAEFTKL 726


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,998
Number of Sequences: 429
Number of extensions: 243
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 65
length of database: 140,377
effective HSP length: 44
effective length of query: 21
effective length of database: 121,501
effective search space:  2551521
effective search space used:  2551521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.1 bits)
S2: 35 (18.2 bits)