GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002125-TA|BGIBMGA002125-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
         (65 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17920.1 68414.m02218 homeobox-leucine zipper family protein ...    29   0.38 
At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-...    28   0.67 
At5g53980.1 68418.m06715 homeobox-leucine zipper family protein ...    25   4.7  
At1g73360.1 68414.m08491 homeobox-leucine zipper family protein ...    25   4.7  
At1g05230.2 68414.m00529 homeobox-leucine zipper family protein ...    25   6.2  
At1g05230.1 68414.m00528 homeobox-leucine zipper family protein ...    25   6.2  

>At1g17920.1 68414.m02218 homeobox-leucine zipper family protein /
          lipid-binding START domain-containing protein similar
          to A20 (GI:1881536) [Arabidopsis thaliana]; similar to
          homeobox protein GI:1173622 from [Phalaenopsis sp.
          SM9108]
          Length = 687

 Score = 29.1 bits (62), Expect = 0.38
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 25 HQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 60
          HQ++ ++S F    +PD K   QLS++ GL  R ++
Sbjct: 31 HQIQRLESTFNECQHPDEKQRNQLSRELGLAPRQIK 66


>At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-10)
           / HD-ZIP transcription factor 10 / homeobox protein
           (GLABRA2) identical to homeobox protein (GLABRA2)
           (homeobox-leucine zipper protein ATHB-10) (HD-ZIP
           protein ATHB-10) GB:P46607 [Arabidopsis thaliana]
          Length = 747

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 26  QLRTMKSYFAINHNPDAKDLKQLSQKTGLPKR 57
           Q+R M++ F    +PD K  +QLS++ GL  R
Sbjct: 112 QIRHMEALFKETPHPDEKQRQQLSKQLGLAPR 143


>At5g53980.1 68418.m06715 homeobox-leucine zipper family protein
          contains Pfam PF00046: Homeobox domain; similar to
          homeobox protein PpHB5 (GI:7415622) [Physcomitrella
          patens]
          Length = 156

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 4/39 (10%)

Query: 26 QLRTMKSYFAINHNPDAKDLK-QLSQKTGLPKRVLQVAI 63
          Q+R ++  F +N   +  DLK QLS + GLP+R  QVA+
Sbjct: 19 QVRQLEKCFTMNKKLEP-DLKLQLSNQLGLPQR--QVAV 54


>At1g73360.1 68414.m08491 homeobox-leucine zipper family protein /
          lipid-binding START domain-containing protein
          protodermal factor2 (GI:14276060) [Arabidopsis
          thaliana]; similar to homeobox protein GI:1173621 from
          [ Phalaenopsis sp.]
          Length = 722

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 26 QLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 60
          Q++ ++S F    +PD K   QLS++ GL  R ++
Sbjct: 43 QIQRLESSFKECPHPDEKQRNQLSRELGLAPRQIK 77


>At1g05230.2 68414.m00529 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           homeobox 1 (GP:12002853) {Picea abies}; Strong
           similarity to Phalaenopsis homeobox protein (gb|U34743)
          Length = 721

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 26  QLRTMKSYFAINHNPDAKDLKQLSQKTGL 54
           Q++ M+++F    +PD K  KQLS++  L
Sbjct: 75  QIQEMEAFFKECPHPDDKQRKQLSRELNL 103


>At1g05230.1 68414.m00528 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           homeobox 1 (GP:12002853) {Picea abies}; Strong
           similarity to Phalaenopsis homeobox protein (gb|U34743)
          Length = 721

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 26  QLRTMKSYFAINHNPDAKDLKQLSQKTGL 54
           Q++ M+++F    +PD K  KQLS++  L
Sbjct: 75  QIQEMEAFFKECPHPDDKQRKQLSRELNL 103


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 986,858
Number of Sequences: 28952
Number of extensions: 21800
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 74
Number of HSP's gapped (non-prelim): 6
length of query: 65
length of database: 12,070,560
effective HSP length: 45
effective length of query: 20
effective length of database: 10,767,720
effective search space: 215354400
effective search space used: 215354400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)