GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002124-TA|BGIBMGA002124-PA|undefined
         (121 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1225 - 35512211-35512240,35512762-35512850,35514162-355143...    27   5.4  

>01_06_1225 -
           35512211-35512240,35512762-35512850,35514162-35514312,
           35514946-35515011,35515517-35515583,35516517-35516590
          Length = 158

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 75  IMTANLGLFICRGFVLSCEMTKAQYLRREWLWELLVVSL 113
           + T +L L + R   L  ++TK  + RR++LW+ L   L
Sbjct: 28  LQTVSLSLAVARWHAL--KITKINFARRQYLWKKLASHL 64


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.328    0.144    0.498 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,555
Number of Sequences: 37544
Number of extensions: 67332
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 117
Number of HSP's gapped (non-prelim): 1
length of query: 121
length of database: 14,793,348
effective HSP length: 74
effective length of query: 47
effective length of database: 12,015,092
effective search space: 564709324
effective search space used: 564709324
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)