GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002124-TA|BGIBMGA002124-PA|undefined
         (121 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  

>SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1512

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 90  LSCEMTKAQYLRREWLWELLVVSLAHLH 117
           ++  MTK Q  ++E +WELL   + ++H
Sbjct: 321 ITLTMTKKQKDQQEAIWELLFTEVTYIH 348


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.328    0.144    0.498 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,159,667
Number of Sequences: 59808
Number of extensions: 69886
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66
Number of HSP's gapped (non-prelim): 1
length of query: 121
length of database: 16,821,457
effective HSP length: 74
effective length of query: 47
effective length of database: 12,395,665
effective search space: 582596255
effective search space used: 582596255
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)