GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002124-TA|BGIBMGA002124-PA|undefined
         (121 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13080.4 68416.m01638 ABC transporter family protein almost i...    26   6.0  
At3g13080.3 68416.m01637 ABC transporter family protein almost i...    26   6.0  
At3g13080.2 68416.m01636 ABC transporter family protein almost i...    26   6.0  
At3g13080.1 68416.m01635 ABC transporter family protein almost i...    26   6.0  

>At3g13080.4 68416.m01638 ABC transporter family protein almost
           identical to MRP-like ABC transporter GI:2316016 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00005
           ABC transporter
          Length = 1120

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/31 (48%), Positives = 16/31 (51%)

Query: 82  LFICRGFVLSCEMTKAQYLRREWLWELLVVS 112
           L IC      CE  KA +L R WL   LVVS
Sbjct: 132 LSICLHRCRDCEHKKAPFLLRLWLVFYLVVS 162


>At3g13080.3 68416.m01637 ABC transporter family protein almost
           identical to MRP-like ABC transporter GI:2316016 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00005
           ABC transporter
          Length = 1120

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/31 (48%), Positives = 16/31 (51%)

Query: 82  LFICRGFVLSCEMTKAQYLRREWLWELLVVS 112
           L IC      CE  KA +L R WL   LVVS
Sbjct: 132 LSICLHRCRDCEHKKAPFLLRLWLVFYLVVS 162


>At3g13080.2 68416.m01636 ABC transporter family protein almost
           identical to MRP-like ABC transporter GI:2316016 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00005
           ABC transporter
          Length = 1489

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/31 (48%), Positives = 16/31 (51%)

Query: 82  LFICRGFVLSCEMTKAQYLRREWLWELLVVS 112
           L IC      CE  KA +L R WL   LVVS
Sbjct: 132 LSICLHRCRDCEHKKAPFLLRLWLVFYLVVS 162


>At3g13080.1 68416.m01635 ABC transporter family protein almost
           identical to MRP-like ABC transporter GI:2316016 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00005
           ABC transporter
          Length = 1514

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/31 (48%), Positives = 16/31 (51%)

Query: 82  LFICRGFVLSCEMTKAQYLRREWLWELLVVS 112
           L IC      CE  KA +L R WL   LVVS
Sbjct: 132 LSICLHRCRDCEHKKAPFLLRLWLVFYLVVS 162


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.328    0.144    0.498 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,368
Number of Sequences: 28952
Number of extensions: 50197
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 4
length of query: 121
length of database: 12,070,560
effective HSP length: 73
effective length of query: 48
effective length of database: 9,957,064
effective search space: 477939072
effective search space used: 477939072
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)