GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002123-TA|BGIBMGA002123-PA|IPR008973|C2
calcium/lipid-binding region, CaLB, IPR000008|C2 calcium-dependent
membrane targeting
         (995 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    29   0.12 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       27   0.63 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    26   1.1  
S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.           25   2.5  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   5.9  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 29.5 bits (63), Expect = 0.12
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 574 EREERISLNNSFRSVRSAKTTEPSHSLDSTKTRHGSLRY-DF 614
           ER+   SLN +F S+R +  T PS  L   +T   + RY DF
Sbjct: 105 ERQRTQSLNEAFASLRKSIPTMPSDKLSKIQTLKLAARYIDF 146


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 27.1 bits (57), Expect = 0.63
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 911 PQDLVAITRGVMTFRKPSSRSKPLEEVMENLR 942
           P  L A+T G++  R P +R +  E+  ENL+
Sbjct: 352 PNPLDAVTSGLLPVRPPLTREEIHEKARENLK 383


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 896 LDRLNKYYHKFCKVFPQDLVAITRGVMTFRKPSSRSKPL-EEVMENLRISVHKK 948
           L ++ + YH+  + + Q     T  VM   +  SR++P+  + +E +   +HKK
Sbjct: 151 LAQIRQIYHQELEKYEQACNEFTTHVMNLLREQSRTRPITPKEIERMVQIIHKK 204


>S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.
          Length = 35

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 574 EREERISLNNSFRSVRSAKTTEPSHSL 600
           ER+   SLN +F S+R +  T PS  L
Sbjct: 5   ERQRTQSLNEAFASLRKSIPTMPSDKL 31


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 556 ISEEIEEELQFHNDYFKTEREER-ISLNNSFRSVRSAKTTEPSHSLDSTKTRHGSLRYDF 614
           +SE+  +    H D +++ERE+  +      R V  A T   +  LD    +H  + YD 
Sbjct: 429 LSEQNIQSTSIHGDRYQSEREKALLDFKTGHRKVLVA-TGVAARGLDIKDVQH-VINYDL 486

Query: 615 KSS 617
             S
Sbjct: 487 PKS 489


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.132    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,465
Number of Sequences: 317
Number of extensions: 9048
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 5
length of query: 995
length of database: 114,650
effective HSP length: 64
effective length of query: 931
effective length of database: 94,362
effective search space: 87851022
effective search space used: 87851022
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)