GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002123-TA|BGIBMGA002123-PA|IPR008973|C2
calcium/lipid-binding region, CaLB, IPR000008|C2 calcium-dependent
membrane targeting
         (995 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      30   0.081
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    30   0.081
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    25   3.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   4.0  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              24   7.0  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         24   7.0  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 30.3 bits (65), Expect = 0.081
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 530 KEASPTEDDPSTCTSEPSMSCDKKNPISEEIEEELQFHNDYFKT-EREERISLNNSFRSV 588
           K  S T ++ S   S  S +  K    S    EE+Q         ER+   SLN +F ++
Sbjct: 217 KRKSSTIENESETESNASSTKTKMRRKSGATFEEIQNQRVMANVRERQRTQSLNEAFAAL 276

Query: 589 RSAKTTEPSHSLDSTKTRHGSLRY-DF 614
           R    T PS  L   +T   + RY DF
Sbjct: 277 RKIIPTLPSDKLSKIQTLKLATRYIDF 303


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 30.3 bits (65), Expect = 0.081
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 616 SSASLEQVSYRCLVNNNKVDKRKT 639
           SSA+   +++RCL  NNK+D R T
Sbjct: 362 SSAATLPITFRCLEENNKIDSRVT 385


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 688 RTENGDHTEEQMDVIRA--QAELLKKN 712
           RT+NGD+T+   D++ A  Q  L+K N
Sbjct: 26  RTKNGDYTKIMPDILTAIGQTPLIKLN 52


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 304 NRQLELVSNHVGLLKHYGH 322
           +RQLELV   VG ++ +GH
Sbjct: 302 DRQLELVQLGVGFMRIFGH 320



 Score = 24.6 bits (51), Expect = 4.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 858 HLSFTITAVFFNIGINEKASLAEALGETIPQYHSNSDNLDRLNKY 902
           HL+     +   IGI+    LA  +G+ +P+Y     N+   NK+
Sbjct: 573 HLTHKGKPIRMRIGIHTGMVLAGVVGKKMPRYCLFGHNVTLANKF 617


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 662 FAYLKAVGTAIEEALASLIRFVVEIIRTENGDHTEEQMDVIRAQAELLKKNV 713
           F +   VG    E L + +     + +TE G   ++  DVI    ++  K V
Sbjct: 8   FGFCVCVGALTIEELKTRLHTEQSVCKTETGIDQQKANDVIEGNIDVEDKKV 59


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 717 ARWLRVSHAALRLRCEA 733
           ++WL ++H+A  +RC A
Sbjct: 71  SKWLSINHSACAIRCLA 87


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 274,433
Number of Sequences: 429
Number of extensions: 11523
Number of successful extensions: 23
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 7
length of query: 995
length of database: 140,377
effective HSP length: 64
effective length of query: 931
effective length of database: 112,921
effective search space: 105129451
effective search space used: 105129451
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)