GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002122-TA|BGIBMGA002122-PA|undefined
         (51 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1699 - 39269477-39269574,39269690-39269929,39270029-392700...    25   7.5  
10_08_0048 - 14441540-14441620,14442044-14442111,14442275-144424...    25   9.9  

>01_06_1699 -
           39269477-39269574,39269690-39269929,39270029-39270092,
           39270251-39270771,39271032-39271326,39271400-39271564,
           39271650-39272237,39272617-39272703,39272982-39274429,
           39274515-39275015,39275574-39275678,39276095-39276143
          Length = 1386

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 3   YNKQELVALASQTSQNFDREGVLVMRERQ 31
           YN  ELV++ +QT  + DR    +  E Q
Sbjct: 481 YNLPELVSMVTQTKVSLDRIEEFIKEEHQ 509


>10_08_0048 - 14441540-14441620,14442044-14442111,14442275-14442493,
            14442506-14444508,14447541-14448410,14448533-14448576,
            14449920-14450093
          Length = 1152

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 7    ELVALASQTSQNFDRE--GVLVMRERQDGFFRRSEDVV 42
            E+  LA+ +S NFD+E    L+    + GFF R+ +V+
Sbjct: 1038 EMKVLATSSSMNFDQELLDSLLYCFVRGGFFLRAMEVI 1075


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.131    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,127,718
Number of Sequences: 37544
Number of extensions: 25154
Number of successful extensions: 43
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 2
length of query: 51
length of database: 14,793,348
effective HSP length: 32
effective length of query: 19
effective length of database: 13,591,940
effective search space: 258246860
effective search space used: 258246860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)