GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002122-TA|BGIBMGA002122-PA|undefined
         (51 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    25   4.9  

>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 1   MRYNKQELVALASQTSQNFDREGVLVMRER 30
           M+  K+E+V    + S  F  EG+++MRE+
Sbjct: 192 MKLYKKEIVCACGRQSYVFFLEGLILMREK 221


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.131    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,028,408
Number of Sequences: 27539
Number of extensions: 24335
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 1
length of query: 51
length of database: 12,573,161
effective HSP length: 32
effective length of query: 19
effective length of database: 11,691,913
effective search space: 222146347
effective search space used: 222146347
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)