GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002122-TA|BGIBMGA002122-PA|undefined
         (51 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67330.1 68414.m07664 expressed protein contains Pfam profile...    26   3.5  
At3g05140.1 68416.m00558 protein kinase family protein contains ...    25   6.1  
At1g09190.1 68414.m01026 pentatricopeptide (PPR) repeat-containi...    25   6.1  

>At1g67330.1 68414.m07664 expressed protein contains Pfam profile
           PF04669: Protein of unknown function (DUF579)
          Length = 291

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 1   MRYNKQELVALASQTSQNFDREGVLVMRERQDGFF 35
           +RYN++  +AL S   + +D E  L+M +   G+F
Sbjct: 179 IRYNEKCPLALTSLPDEFYDTEWDLIMVDAPKGYF 213


>At3g05140.1 68416.m00558 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 460

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 3   YNKQELVALASQTSQNFDREGVLVMRERQ-DGFFRRSEDVVVT 44
           YN++EL+ L S  S   D+  +L  R  Q        EDVV+T
Sbjct: 376 YNREELIRLTSTASLCIDQSSLLRPRMSQVVELLLGHEDVVMT 418


>At1g09190.1 68414.m01026 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 999

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 2   RYNKQELVALASQTSQNFDREGVLVMRERQDGFFRRSEDVVVTNYALAKE 51
           R+  +EL ++ ++     D E +     R++GFF+R  + +V    L +E
Sbjct: 252 RFGTRELSSVVAKLCSEGDEELI-----RREGFFKRRSEFIVAGAVLLEE 296


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.131    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 964,450
Number of Sequences: 28952
Number of extensions: 22397
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 3
length of query: 51
length of database: 12,070,560
effective HSP length: 32
effective length of query: 19
effective length of database: 11,144,096
effective search space: 211737824
effective search space used: 211737824
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)