GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002121-TA|BGIBMGA002121-PA|undefined
         (166 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    30   0.15 
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    29   0.35 
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    26   2.5  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    26   3.3  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    26   3.3  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    26   3.3  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   4.4  
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    25   5.8  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   5.8  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   5.8  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   7.6  

>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 30.3 bits (65), Expect = 0.15
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 16  LVTYGVNEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQTKKFQALKENII-AGS 74
           L +Y  N    + +   PT S  G   P+ P+   +   G +S  +   ++   I+ A S
Sbjct: 409 LPSYPTNLARPKAIKPMPT-SIHGQTSPLSPIPPVHTTHGLVSDIRPLPSVSSPIMRADS 467

Query: 75  NPISHRMLLFPSVMIFPE 92
            PISH + + PS    P+
Sbjct: 468 TPISHNLAVTPSFSPIPQ 485


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 29.1 bits (62), Expect = 0.35
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 11  DETGELVTYGVNEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQTKK 62
           DE  + VT  + E+  +  +  P   F  TPR  PP + P  P  P +  KK
Sbjct: 125 DEDDKHVTVEIVEDDDDEEIAYPKEGFV-TPRISPPPDVPLRPHKPKNAAKK 175


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 32  NPTVSFFGTPRPIPPMETPNFPEGPMSQTKKFQALKENIIAGSNP 76
           N +  F GTPRP+ P+  P   +    + K  +   E+I+   NP
Sbjct: 92  NKSFDFSGTPRPMHPISHP-LSQHKTPEFKHRKRNVESILTPKNP 135


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 47 METPNFPEGPMSQTKKFQALKEN 69
          M  PN P+ P  Q +KF+A+  N
Sbjct: 4  MTVPNTPQKPNLQQQKFEAINAN 26


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 20  GVNEETGEPMVN-NPTVSFFGTPRPIPPMETPNFPE 54
           G+ ++ G  + N N     FG   P+ P+E P+ PE
Sbjct: 85  GIRDKGGVEISNKNDPYIQFGKADPLEPLEKPDLPE 120


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 714

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 22 NEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQTKKFQALKENIIAGSNPISHRM 81
          ++E GE   ++P +        +PPM+ P FPE  + Q   F        A   P     
Sbjct: 30 DKEDGEISEDDPVID---QSNSVPPMKVPTFPE-QIPQLPPFDRF-PGTNANFFPFGAPF 84

Query: 82 LLFPSVMIFP 91
          +L P++M  P
Sbjct: 85 MLPPALMFGP 94


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 2/25 (8%)

Query: 27  EPMVNNPTVSFFGTPRPI-PPMETP 50
           EP+++ PT+ +  TP P+ PP E+P
Sbjct: 584 EPLLS-PTIDYSATPFPLEPPPESP 607


>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 14/58 (24%), Positives = 23/58 (39%)

Query: 1   MATARGFFFDDETGELVTYGVNEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMS 58
           ++TA G         +   G+  E  EP  N+P   +      + P+ +  F  GP S
Sbjct: 54  ISTANGSAIIRAGENVFVCGIKAEIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPS 111


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 9   FDDETGELVTYGVNEETGEPMVNNP----TVSFFGTPRPIPPMETP 50
           +D  TG L+   VN +     + NP       + G P  +PP   P
Sbjct: 72  YDPATGRLLYRNVNTQVSHTAIPNPANGYAAVYGGPPSQLPPPPQP 117


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 142 ELASRIGQMQDKRRNRYDYF 161
           +L +++G  +D  RN YD+F
Sbjct: 215 DLTNKLGFQRDSMRNMYDFF 234


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 61   KKFQALKENIIAGSNPISHRMLLFPSVMIFP 91
            + + A + N I G NP S+R++  PS +  P
Sbjct: 1362 QNYLANRVNTIGGLNPKSYRLITSPSNLTNP 1392


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.140    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 757,399
Number of Sequences: 5004
Number of extensions: 29822
Number of successful extensions: 83
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 11
length of query: 166
length of database: 2,362,478
effective HSP length: 68
effective length of query: 98
effective length of database: 2,022,206
effective search space: 198176188
effective search space used: 198176188
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)