GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002121-TA|BGIBMGA002121-PA|undefined
         (166 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0592 + 26477974-26479311                                         29   2.5  
12_02_0123 - 13930138-13932471                                         28   4.4  
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    28   4.4  
11_02_0086 + 8186355-8186667,8186773-8187335                           27   5.8  
11_01_0174 + 1394229-1394346,1394695-1394891,1394972-1395052,139...    27   5.8  
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996...    27   7.6  
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    27   7.6  
02_05_0814 - 31970558-31971126,31971242-31971413                       27   7.6  

>04_04_0592 + 26477974-26479311
          Length = 445

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query: 33  PTVSFFGTPRPIPPMETPNFPEGPMSQTKKFQA 65
           PT +   TP P PP+  P  P  P    KK  A
Sbjct: 89  PTPTTTTTPTPTPPLPPPAPPASPAKSNKKASA 121


>12_02_0123 - 13930138-13932471
          Length = 777

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 34 TVSFFGTPRPIPPMETPNFPEGPMSQTKKFQAL 66
          +++FFGT RP  P++  + P  P  Q+ K + L
Sbjct: 7  SIAFFGTYRPPVPLDIFSCPANPPPQSAKDELL 39


>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/28 (50%), Positives = 14/28 (50%)

Query: 38  FGTPRPIPPMETPNFPEGPMSQTKKFQA 65
           FG P   PPM  P F  GP  QT  F A
Sbjct: 422 FGVPPGPPPMLPPPFYPGPPIQTGDFAA 449


>11_02_0086 + 8186355-8186667,8186773-8187335
          Length = 291

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 28  PMVNNPTVSFFGTP-RPIPPMETPNFPEGPMS 58
           P+V +P  S   +P RP PP+ +P  PE P++
Sbjct: 221 PVVASPRDSSIASPPRPEPPVASPPGPEPPVA 252


>11_01_0174 +
          1394229-1394346,1394695-1394891,1394972-1395052,
          1395184-1395393,1395531-1395608,1395682-1395990
          Length = 330

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 55 GPMSQTKKFQALKENIIAGSNPISHRML 82
          GP+S+ + F AL   I  G NP +HR L
Sbjct: 19 GPLSE-RDFHALFSAISGGKNPATHRQL 45


>10_06_0039 -
           9966744-9967535,9968241-9968482,9969021-9969223,
           9969333-9970645
          Length = 849

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 40  TPRPIPPMETPNFPEGPMSQTKKFQAL 66
           TP+P PP   P  P GP+S  +  + L
Sbjct: 345 TPKPPPPPPPPEPPTGPVSARRLLRPL 371


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 40  TPRPIPPMETPNFPEGPMSQTKKFQALKEN 69
           +P P PP+  P  P  P + T KF +   N
Sbjct: 107 SPTPAPPLPPPPAPAPPPTPTPKFPSSSAN 136


>02_05_0814 - 31970558-31971126,31971242-31971413
          Length = 246

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 28  PMVNNPTVSFFGTPRPIPPMETPNFPEGPMS 58
           P   NP+     TP P  PM T  +P  PM+
Sbjct: 152 PTTPNPSTPTPTTPYPSTPMPTTPYPSTPMT 182


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.140    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,694,663
Number of Sequences: 37544
Number of extensions: 185210
Number of successful extensions: 524
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 515
Number of HSP's gapped (non-prelim): 11
length of query: 166
length of database: 14,793,348
effective HSP length: 77
effective length of query: 89
effective length of database: 11,902,460
effective search space: 1059318940
effective search space used: 1059318940
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)