GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002121-TA|BGIBMGA002121-PA|undefined
         (166 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)                    28   3.4  
SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              27   5.9  
SB_57263| Best HMM Match : SAM_1 (HMM E-Value=1.5)                     27   7.8  

>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
          Length = 1348

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 30  VNNPTVSFFGTPRPIPPMETPNFPEGPMSQTKKFQA 65
           V   T  +   PRP PPM TP +   P  +++  +A
Sbjct: 187 VGGGTYDYVPPPRPTPPMNTPTYEIPPPFKSRPEEA 222


>SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1331

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 13  TGELVTYGVNEETGEPMVNNPTVSFFGT-PRPIPPMETPNFPEGPMS 58
           T E + Y  ++ T  PM+ +  V  FG  P  +PP+  P F   P S
Sbjct: 669 TSETLQYNRSKMTPFPMMPHAPVYPFGQWPGMVPPLWQPAFLNSPFS 715


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 19   YGVNEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQT 60
            +G   +TG P    P    F  P P  P    N+P  PM QT
Sbjct: 1259 HGYGPDTG-PYAPGP---MFNGPAPYRPYAPENYPRAPMMQT 1296


>SB_57263| Best HMM Match : SAM_1 (HMM E-Value=1.5)
          Length = 574

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 50  PNFPEGPMSQTKKFQALKENIIAGSNPISHRMLLFPSVMIFPE 92
           P  P+ P  Q  +   L+    +GS  + H  LLF   ++FPE
Sbjct: 161 PRKPKKPRLQELETNDLESE--SGSEDVIHPSLLFQDALVFPE 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.140    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,417,898
Number of Sequences: 59808
Number of extensions: 207912
Number of successful extensions: 551
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 550
Number of HSP's gapped (non-prelim): 4
length of query: 166
length of database: 16,821,457
effective HSP length: 77
effective length of query: 89
effective length of database: 12,216,241
effective search space: 1087245449
effective search space used: 1087245449
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)