Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002121-TA|BGIBMGA002121-PA|undefined
(166 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical pr... 30 0.73
U61954-6|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z82283-1|CAB05282.1| 354|Caenorhabditis elegans Hypothetical pr... 27 5.1
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 27 5.1
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 27 5.1
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 27 5.1
AY046083-1|AAL02420.1| 354|Caenorhabditis elegans zinc finger p... 27 5.1
U39677-3|AAC47957.2| 565|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z68314-10|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical p... 27 9.0
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 27 9.0
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 27 9.0
>Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical
protein F55C5.4 protein.
Length = 1010
Score = 30.3 bits (65), Expect = 0.73
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 61 KKFQALKENIIAGSNPISHRMLLF-PSVMIFPE 92
+K A++E+IIA +NP + R + F P+++I PE
Sbjct: 38 RKLWAVQEDIIANANPSTLRCIFFAPALLICPE 70
>U61954-6|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical protein
F41H10.3a protein.
Length = 1140
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 23 EETGEPMVNNPTVSF---FGTPRPIPPMETPNFPEGPMSQTKKFQALKENIIAGS 74
EET E M ++P +S T P PP P + T AL + I AGS
Sbjct: 1019 EETAEKMSSSPLLSSQAPMTTLMPTPPPPAPAPAQASAQSTSATPALVDTISAGS 1073
>Z82283-1|CAB05282.1| 354|Caenorhabditis elegans Hypothetical
protein T23G4.1 protein.
Length = 354
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 28 PMVNNPTVSFFGTPRPIPPMETPNFPEG 55
P PT++F G P+P PM P +G
Sbjct: 85 PQSKEPTLTFPGLPKPSFPMGMPGMMQG 112
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 5 RGFFFDDETGELVTYGVNEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQTKKFQ 64
+ F D +V +N++ P N T+ R PP+E P+G S ++
Sbjct: 1599 KDFVSTDTAYAVVVQAINDDGPGPYSNQYTIRTMSRAREGPPVELRVEPDGQRSAVAQW- 1657
Query: 65 ALKENIIAGSNPISHRM 81
KE + + PI + +
Sbjct: 1658 --KEPVTSDVPPIGYEI 1672
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 11 DETGELVTYGVNEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQ 59
DE G +V Y V G P+ + T SF + I + P GP Q
Sbjct: 11035 DENGNVV-YSVTNPDGTPLATDSTGSFIASNGLIVEKDDEGKPIGPDGQ 11082
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 5 RGFFFDDETGELVTYGVNEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQTKKFQ 64
+ F D +V +N++ P N T+ R PP+E P+G S ++
Sbjct: 1662 KDFVSTDTAYAVVVQAINDDGPGPYSNQYTIRTMSRAREGPPVELRVEPDGQRSAVAQW- 1720
Query: 65 ALKENIIAGSNPISHRM 81
KE + + PI + +
Sbjct: 1721 --KEPVTSDVPPIGYEI 1735
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 11 DETGELVTYGVNEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQ 59
DE G +V Y V G P+ + T SF + I + P GP Q
Sbjct: 11080 DENGNVV-YSVTNPDGTPLATDSTGSFIASNGLIVEKDDEGKPIGPDGQ 11127
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 5 RGFFFDDETGELVTYGVNEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQTKKFQ 64
+ F D +V +N++ P N T+ R PP+E P+G S ++
Sbjct: 1662 KDFVSTDTAYAVVVQAINDDGPGPYSNQYTIRTMSRAREGPPVELRVEPDGQRSAVAQW- 1720
Query: 65 ALKENIIAGSNPISHRM 81
KE + + PI + +
Sbjct: 1721 --KEPVTSDVPPIGYEI 1735
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 11 DETGELVTYGVNEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQ 59
DE G +V Y V G P+ + T SF + I + P GP Q
Sbjct: 11080 DENGNVV-YSVTNPDGTPLATDSTGSFIASNGLIVEKDDEGKPIGPDGQ 11127
>AY046083-1|AAL02420.1| 354|Caenorhabditis elegans zinc finger
protein TLP-1 protein.
Length = 354
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 28 PMVNNPTVSFFGTPRPIPPMETPNFPEG 55
P PT++F G P+P PM P +G
Sbjct: 85 PQSKEPTLTFPGLPKPSFPMGMPGMMQG 112
>U39677-3|AAC47957.2| 565|Caenorhabditis elegans Hypothetical
protein C16E9.1 protein.
Length = 565
Score = 27.1 bits (57), Expect = 6.8
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 27 EPMVNNPTVSFFGTPRPIPP---METPNFPEGPMSQTKKF--QALK-ENIIAGSNPISH 79
+P +P +F TP P PP + P P+ K+ Q LK E+++ G+N SH
Sbjct: 43 DPPGYDPDSTFDTTPTPAPPSNGLRAPPMPKWTQEIPKESSGQQLKIEDVVVGNNIDSH 101
>Z68314-10|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 28 PMVNNPTVSFFGTPRPIPPMETPN-FPEGPMS 58
P + P S F +P +PP TP+ F GPMS
Sbjct: 1205 PGLTTPMASIFQSP-TMPPPHTPSPFSAGPMS 1235
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 28 PMVNNPTVSFFGTPRPIPPMETPN-FPEGPMS 58
P + P S F +P +PP TP+ F GPMS
Sbjct: 1205 PGLTTPMASIFQSP-TMPPPHTPSPFSAGPMS 1235
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 28 PMVNNPTVSFFGTPRPIPPMETPN-FPEGPMS 58
P + P S F +P +PP TP+ F GPMS
Sbjct: 1205 PGLTTPMASIFQSP-TMPPPHTPSPFSAGPMS 1235
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.324 0.140 0.428
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,138,345
Number of Sequences: 27539
Number of extensions: 171665
Number of successful extensions: 450
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 436
Number of HSP's gapped (non-prelim): 23
length of query: 166
length of database: 12,573,161
effective HSP length: 76
effective length of query: 90
effective length of database: 10,480,197
effective search space: 943217730
effective search space used: 943217730
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)
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