GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002121-TA|BGIBMGA002121-PA|undefined
         (166 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48050.2 68416.m05239 bromo-adjacent homology (BAH) domain-co...    29   1.6  
At3g48050.1 68416.m05238 bromo-adjacent homology (BAH) domain-co...    29   1.6  
At3g55580.1 68416.m06171 regulator of chromosome condensation (R...    27   4.8  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    27   4.8  
At5g17980.1 68418.m02109 C2 domain-containing protein contains I...    27   8.4  
At4g18600.1 68417.m02755 expressed protein                             27   8.4  
At2g20610.2 68415.m02412 aminotransferase, putative similar to n...    27   8.4  
At2g20610.1 68415.m02411 aminotransferase, putative similar to n...    27   8.4  

>At3g48050.2 68416.m05239 bromo-adjacent homology (BAH)
            domain-containing protein contains Pfam profile PF01426:
            BAH domain
          Length = 1613

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 31   NNPTVSFFGTPRPIPPMETPNFPEGPMS 58
            NN + S F TP P+ P++T  FP  P+S
Sbjct: 1150 NNFSGSVFLTPTPLQPVKTLPFPVAPVS 1177


>At3g48050.1 68416.m05238 bromo-adjacent homology (BAH)
            domain-containing protein contains Pfam profile PF01426:
            BAH domain
          Length = 1613

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 31   NNPTVSFFGTPRPIPPMETPNFPEGPMS 58
            NN + S F TP P+ P++T  FP  P+S
Sbjct: 1150 NNFSGSVFLTPTPLQPVKTLPFPVAPVS 1177


>At3g55580.1 68416.m06171 regulator of chromosome condensation
           (RCC1) family protein UVB-resistance protein UVR8,
           Arabidopsis thaliana, EMBL:AF130441; contains Pfam
           PF00415: Regulator of chromosome condensation (RCC1)
           domain
          Length = 488

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 12  ETGELVTYGVNEETGEPMVNNPTVSFFGTPRPIPP 46
           E+G+L+T+G  ++ G+  V +        P P+PP
Sbjct: 81  ESGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPP 115


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 12/97 (12%)

Query: 7   FFFDDETGELVTYGVNEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQTKKFQAL 66
           FFF     + V++G     G P+ N  TV  FG       + + N+ +   S +KK  + 
Sbjct: 295 FFFSGSGDDSVSFG---NLGWPLAN--TV-VFGV------LLSENYNDDKFSSSKKKDSE 342

Query: 67  KENIIAGSNPISHRMLLFPSVMIFPELFCVLLLILEV 103
           +E ++     I   +  FP + ++  L C LLL + V
Sbjct: 343 REFLVTFLCTIVLELFYFPELSLWGLLLCGLLLYIAV 379


>At5g17980.1 68418.m02109 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1049

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 10  DDETGELVTYGVNEETGEPMVNNPTVSFFGTPRPI-PPMETPNFPEGPMSQTKKFQALKE 68
           +++T E    G +E    P  N+       T +P  PP E  +  EGP    +    L+E
Sbjct: 154 EEKTEETKAEGPDESKPPPETNDIPAEVKETVKPPQPPPEESSPAEGPKPDEEASPPLQE 213

Query: 69  NIIAG 73
           N   G
Sbjct: 214 NATVG 218


>At4g18600.1 68417.m02755 expressed protein
          Length = 1907

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 44   IPPMETPNFPEGPMSQTKKFQALKENIIAGSNPISHRMLLFPSVMIFPE 92
            IPP+E P      + ++  ++      + G+NP       FP+ + FP+
Sbjct: 1125 IPPLEDPGSTHPSLEESVPYEEASHEELVGTNPFLES--AFPNEIGFPD 1171


>At2g20610.2 68415.m02412 aminotransferase, putative similar to
           nicotianamine aminotransferase from Hordeum vulgare
           [GI:6498122, GI:6469087]; contains Pfam profile PF00155
           aminotransferase, classes I and II
          Length = 436

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 51  NFPEGPMSQTKKFQALKENIIAGSNPISHRMLLFPSVM 88
           N PEG    TK  Q++K+N+    +P +      P+++
Sbjct: 291 NDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAIL 328


>At2g20610.1 68415.m02411 aminotransferase, putative similar to
           nicotianamine aminotransferase from Hordeum vulgare
           [GI:6498122, GI:6469087]; contains Pfam profile PF00155
           aminotransferase, classes I and II
          Length = 462

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 51  NFPEGPMSQTKKFQALKENIIAGSNPISHRMLLFPSVM 88
           N PEG    TK  Q++K+N+    +P +      P+++
Sbjct: 291 NDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAIL 328


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.140    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,866,927
Number of Sequences: 28952
Number of extensions: 152626
Number of successful extensions: 396
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 8
length of query: 166
length of database: 12,070,560
effective HSP length: 76
effective length of query: 90
effective length of database: 9,870,208
effective search space: 888318720
effective search space used: 888318720
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)