GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002120-TA|BGIBMGA002120-PA|IPR001300|Peptidase C2,
calpain, IPR000834|Peptidase M14, carboxypeptidase A
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    29   1.2  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    29   1.2  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    29   2.0  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    29   2.0  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    28   3.5  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    28   3.5  
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    28   3.5  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    28   3.5  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    27   4.7  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   6.2  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    27   8.2  
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    27   8.2  

>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 349 SNKPLKMKVLDDPPQMTKAALVKAPP---GSDSNGFFQYETLFLQLADAHRTIDIFELQE 405
           S  P +   +  PP  T++AL  A      +D    F  ET++   ADA RT  +  + +
Sbjct: 22  SEHPFEHTRVSIPPSETRSALENAANILRNTDYPVAFPTETVYGLGADARRTEAVLSIYK 81

Query: 406 LLDACLPNDYIKSCVSIDTLKHLQL 430
             +    N  I    S+D L+ L L
Sbjct: 82  AKNRPADNPLIVHVASLDQLRRLLL 106


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 35  PADQRMDTSYAGVFRLHGSYEALKYGSLLDGLADLTGGITESIVMPELSDGSALRT 90
           P   R ++S+   FR   S   +++G LL+G+ D +    + + + ELS+  A+ T
Sbjct: 347 PQTYRFNSSFHP-FRSAFSAPGVQFGRLLEGIKDFSDPTVQMLSLQELSEAFAMST 401


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 116 LPTGIRLVKIRLRRSVINIFQVDTTNEPVY-LIRLRRPLGHGETPISHIVLDTALWKTI 173
           LP+  R     L+R   N +Q+  + EPV  LI +   L HG  P+  I +  A  +T+
Sbjct: 577 LPSASRFCVESLKRQKAN-YQMSRSQEPVIPLIEMHDILFHGNGPLEQIHMTKATARTL 634


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 433 KTHAREKMGVLRVERLRDALKDVGFIVPER 462
           + HAR+K+  L   RLRD   DV F V  R
Sbjct: 79  RNHARQKLSSLAPTRLRDLCMDVFFEVQSR 108


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 17/101 (16%)

Query: 352 PLKMKVLDDPPQMTKAALVKAPPGSDSNGFFQYETLFLQLADAHRTI--DIFELQELLDA 409
           PL ++ LDDP    +  ++ APPG             LQL+++   +  +I EL+  L+A
Sbjct: 599 PLDLE-LDDPTYSDEEEVLFAPPGD------------LQLSESIDELNNNIEELKAQLNA 645

Query: 410 CLPNDYIKSCVSIDTLKHLQLVFKTHAREKMGVLRVERLRD 450
              N  IK    +   K L+ + K H   +  + R ER RD
Sbjct: 646 I--NTLIKKAELVADQKQLKSLTKNHQEIEKAIHRKERQRD 684


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 21  GVLYLCKGLFYRVVPADQRMDTSYAGVFRLHGSYEALKYGSLLDGLADLTGGI 73
           G L +C     R+V + Q     Y  V RLH S E  +  ++   +  LTG +
Sbjct: 105 GCLIICNDRATRLVKSQQSAGKEYVCVLRLHDSVEGER--NVASAIETLTGAL 155


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/57 (26%), Positives = 28/57 (49%)

Query: 432 FKTHAREKMGVLRVERLRDALKDVGFIVPERVISLLVFRYMRKDGMLRFGDFVSAVM 488
           F+   ++  G++ V  LR  L  +G  +    +  L+     KDGM+ + DFV  ++
Sbjct: 83  FQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKDGMVNYHDFVQMIL 139


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 413 NDYIKSCVSIDTLKHLQLVFKTHAREKMGVLRV----ERLRDAL 452
           ND     V ID LKH ++ ++ +A E++  + +    ER RD L
Sbjct: 8   NDLYPIAVLIDELKHDEITYRLNALERLSTIALALGPERTRDEL 51


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 206 HLDTETSRAELSLSEKQK-WQMKMHQGGWKRGVSAGGCR 243
           H D    + E S SE    W +KM +  WKR V +G  R
Sbjct: 181 HTDYSGQKREYSASELSGVWAVKMVRDLWKRNVWSGDAR 219


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 273  SIMEPKVIGFSVYKMPKFLTETANQMFFKRIKSTINSQYTNSRQ 316
            +I+   +IGFS YK    + ET N+MF   + +  ++   N  Q
Sbjct: 1098 NIVAGLIIGFSFYKQGVGVEETQNKMFSAYMLTVASTSTMNGLQ 1141


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/53 (18%), Positives = 28/53 (52%)

Query: 448 LRDALKDVGFIVPERVISLLVFRYMRKDGMLRFGDFVSAVMHLHRVFVQVYDF 500
           + ++ KD+ F V + ++ L+  +  +++GM++  + +S +  L      +  F
Sbjct: 170 IENSFKDINFRVNQEIMGLVELQNHQQEGMVQQKEILSTIKQLKSEIFDINSF 222


>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 460 PERVISLLVFRYMRKDGMLRFGDFVSAVMH 489
           P+ V+  L+FRY   +GM R+   +  V+H
Sbjct: 133 PDDVLEQLMFRYEEPNGMTRWDSPLFTVLH 162


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.139    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,010
Number of Sequences: 5004
Number of extensions: 95090
Number of successful extensions: 272
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 266
Number of HSP's gapped (non-prelim): 14
length of query: 510
length of database: 2,362,478
effective HSP length: 76
effective length of query: 434
effective length of database: 1,982,174
effective search space: 860263516
effective search space used: 860263516
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)