GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002119-TA|BGIBMGA002119-PA|IPR008957|Fibronectin, type
III-like fold, IPR007110|Immunoglobulin-like, IPR003599|Immunoglobulin
subtype, IPR013162|CD80-like, immunoglobulin C2-set
         (664 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    27   0.41 
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    25   2.2  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    25   2.2  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 27.1 bits (57), Expect = 0.41
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 9/103 (8%)

Query: 113 HDGTALLLKHVSDDDAGTYRCRVHYQASPSVDHVVDLKLVDSPGAPKIYNENNELIKLGY 172
           H+   L ++ V  +D G Y+C +      S +   +LKL      P+I +  NE      
Sbjct: 370 HNEAVLRIESVRKEDKGMYQCFIR-NDQESAEATAELKLGGRFEPPQIRHAFNE----ET 424

Query: 173 VGPISLGANLTFVCKVADDQPKTLVYWRRNGAVIKRAEAARSG 215
           V P     N  F+  +A   P   + W   G  +  +E  + G
Sbjct: 425 VQP----GNSVFLKCIASGNPTPEITWELYGRRLSNSERNQIG 463



 Score = 25.4 bits (53), Expect = 1.3
 Identities = 15/66 (22%), Positives = 26/66 (39%)

Query: 375 GEAETVTCVVEASPEPMQFSWTFADSKTLYTSVKKVSGHNHRYMSSLTWKPREEDLGQLV 434
           G+  +V C V     P+  SWT        T+   ++  + R  +      +   +G   
Sbjct: 618 GDGVSVQCTVSKGDYPLNISWTLNGHFIDQTNGIVINRASKRVSTLSIDNVQSTHVGNYT 677

Query: 435 CRATNS 440
           C A+NS
Sbjct: 678 CLASNS 683



 Score = 25.0 bits (52), Expect = 1.7
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 114  DGTALLLKHVSDDDAGTYRCRVHYQASPSVDHVVDLKLVDS-PGAPKI 160
            DG+ L ++ VS ++AG Y C  H +     D V    +V++ P AP+I
Sbjct: 1358 DGS-LFIRDVSRNNAGEYSC--HVENDYGQDSVTHQLIVNAPPHAPQI 1402


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 485 RPQTVHLEIVDESGKLLHNVTDPAGHFHVTDIEDE 519
           RP  +HL +    GKL H+ ++  G    T  E E
Sbjct: 220 RPDLIHLLMEARKGKLKHDNSNEGGEGFATVEESE 254


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 602 VPRPDGVFHREPDFTREER 620
           VP P G +H EP    EER
Sbjct: 20  VPPPFGYYHEEPPLFYEER 38


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,772
Number of Sequences: 317
Number of extensions: 6878
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 6
length of query: 664
length of database: 114,650
effective HSP length: 61
effective length of query: 603
effective length of database: 95,313
effective search space: 57473739
effective search space used: 57473739
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)