GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002119-TA|BGIBMGA002119-PA|IPR008957|Fibronectin, type
III-like fold, IPR007110|Immunoglobulin-like, IPR003599|Immunoglobulin
subtype, IPR013162|CD80-like, immunoglobulin C2-set
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.90 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    29   2.1  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      29   2.1  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    28   3.6  
SPCC417.02 |dad5|hsk3, hos3|DASH complex subunit Dad5|Schizosacc...    28   4.8  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    27   6.3  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    27   8.3  

>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 458 PISPECVVIRSYPNVLRVQCKK-AWNGGRPQTVHLEI--VDESGKLLHNVTDPAGHFHVT 514
           P + + +VI    N L    +   WN    + V LE    D+SG+++   T         
Sbjct: 77  PRAEDLLVIEPSQNSLVPSTQNNEWNEIARKRVSLESDHPDKSGQVIDLATGQILDKQTE 136

Query: 515 DIEDERNLTAFVYASNVRGRSQSRIM--RLQSMKPLTSSVSDDPPIPTW 561
           DI+D+RN +A V  S VR   + +++   +QS  P  SS++ + P  TW
Sbjct: 137 DIDDDRNKSA-VSKSLVRHPHRLKMLPFGIQSAHPYISSLNSNYP-TTW 183


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/47 (27%), Positives = 26/47 (55%)

Query: 520 RNLTAFVYASNVRGRSQSRIMRLQSMKPLTSSVSDDPPIPTWTRWLE 566
           ++LT+F   +N   + +   +  Q ++PL S  + +  IP W+R +E
Sbjct: 259 QSLTSFFMKANTALKIEYAYLMEQLLRPLISRATFEVNIPAWSRTIE 305


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 371 GAVHGEAETVTCVVEASPEPMQFSWTF 397
           G  HG   + T   E+ PEP  F+W F
Sbjct: 394 GFSHGRDSSDTSCTESPPEPSHFAWAF 420


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 306 SVHKELHDGNYTVSSLTLAPSLRDNKHDLTCRAHNSHLPNDLFENKVKL 354
           + HK   DGNY+ ++  ++        DL+   H   L   L EN  +L
Sbjct: 5   NAHKSAEDGNYSETTNAISLKNERQSRDLSVNKHGRMLLTALLENFCQL 53


>SPCC417.02 |dad5|hsk3, hos3|DASH complex subunit
           Dad5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 94

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)

Query: 493 IVDESGKLLHNVTDPAGHFHVTDIEDE--RNLTAFVYASNVRGRSQSRIMRLQSMKPLTS 550
           +VD+  KL  N++    H HVT I+ E  R L A + AS +   +  R+M    ++  + 
Sbjct: 30  LVDQLSKLQSNMSHLENHLHVTAIQAEAIRRLGA-LQASLL--MASGRVMSEARIQKSSD 86

Query: 551 SVSDDPPI 558
           +V +D P+
Sbjct: 87  AVEEDVPM 94


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 296 WHLGDNMLRPSVHKELHDGNYTVSSLT-LAPSLRDNKHDLTCRAHNSH 342
           W+L + ML P+V+  ++ GN  V SLT L    R++++ +  RA  +H
Sbjct: 77  WNL-NRMLIPNVYLNINWGNDDVHSLTNLETIAREHRYQVLTRACITH 123


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 8/21 (38%), Positives = 16/21 (76%)

Query: 417 YMSSLTWKPREEDLGQLVCRA 437
           +M ++ W+ RE ++G++VC A
Sbjct: 145 FMKTVHWRSREMNVGEIVCNA 165


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,112
Number of Sequences: 5004
Number of extensions: 128311
Number of successful extensions: 247
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 7
length of query: 664
length of database: 2,362,478
effective HSP length: 77
effective length of query: 587
effective length of database: 1,977,170
effective search space: 1160598790
effective search space used: 1160598790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)