GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002119-TA|BGIBMGA002119-PA|IPR008957|Fibronectin, type
III-like fold, IPR007110|Immunoglobulin-like, IPR003599|Immunoglobulin
subtype, IPR013162|CD80-like, immunoglobulin C2-set
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0511 + 18435745-18436499,18436624-18436742,18436788-184373...    31   3.9  
07_01_0244 + 1786009-1788048                                           31   3.9  
09_03_0166 + 12956794-12956832,12956936-12956977,12957084-129571...    30   6.8  
03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,960...    29   9.0  

>10_08_0511 +
           18435745-18436499,18436624-18436742,18436788-18437372,
           18438534-18438667,18439128-18439148,18439656-18439739,
           18439832-18440077,18440763-18440925,18441024-18441066,
           18441392-18441773,18442212-18442267,18442351-18442417,
           18442542-18442721
          Length = 944

 Score = 30.7 bits (66), Expect = 3.9
 Identities = 17/69 (24%), Positives = 31/69 (44%)

Query: 299 GDNMLRPSVHKELHDGNYTVSSLTLAPSLRDNKHDLTCRAHNSHLPNDLFENKVKLNVGF 358
           G + + PS   E +     + +  L  S+      ++CR++   +P D + N+V L +G 
Sbjct: 759 GSSKVAPSASYERYAATTRLPNGELPSSISPGADYMSCRSYLDQVPTDRYSNRVTLQLGL 818

Query: 359 RPFCLSNRQ 367
                SN Q
Sbjct: 819 SRAGNSNVQ 827


>07_01_0244 + 1786009-1788048
          Length = 679

 Score = 30.7 bits (66), Expect = 3.9
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 93  DNRAFASDRVYGTTCE-SGSCHDGTALLLKHVSDDDAGT 130
           + R+F S  V+  TC  SGSC DG   ++   +D  A +
Sbjct: 77  ETRSFTSTFVFAVTCSGSGSCGDGMTFVISSTADFPAAS 115


>09_03_0166 +
           12956794-12956832,12956936-12956977,12957084-12957149,
           12957237-12957350,12957435-12957515,12957613-12957690,
           12958702-12958784,12959645-12959726,12959801-12959901,
           12960016-12960055,12960162-12960221,12960302-12960348,
           12960437-12960575,12960716-12960931,12961010-12961344,
           12961525-12961596,12962449-12962589,12962680-12962716,
           12962837-12963256
          Length = 730

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 18/52 (34%), Positives = 25/52 (48%)

Query: 225 NATRNELDAHYECLAQNADVTDPLTASFVVKMFLPPMRVEIRLNNNLNFEAG 276
           NATR +  AH   L +   +   L+   +VK +L  +R E  LN  L F  G
Sbjct: 20  NATREKAQAHIRELEEEVKLLKNLSHPNIVKRYLGTVREEDTLNILLEFVPG 71


>03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,
            9608898-9609275,9609380-9609658,9610044-9610168,
            9610269-9610335,9610582-9612006
          Length = 1062

 Score = 29.5 bits (63), Expect = 9.0
 Identities = 21/63 (33%), Positives = 27/63 (42%)

Query: 2    LSFGLWYFVIAAASTAADTGIKMLSFGLWYFVIAAASTAADTEVVVLRAVRGRNARLPCG 61
            +SFGL + ++     A   GI  LSF  W  VIA A      + V+    R   AR    
Sbjct: 996  VSFGLHFLILYVPFLAQVFGIVPLSFNEWLLVIAVAFPVVLIDEVLKFVGRCLTARARKQ 1055

Query: 62   QGK 64
             GK
Sbjct: 1056 SGK 1058


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.135    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,982,367
Number of Sequences: 37544
Number of extensions: 862748
Number of successful extensions: 1534
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1529
Number of HSP's gapped (non-prelim): 6
length of query: 664
length of database: 14,793,348
effective HSP length: 87
effective length of query: 577
effective length of database: 11,527,020
effective search space: 6651090540
effective search space used: 6651090540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)