GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002119-TA|BGIBMGA002119-PA|IPR008957|Fibronectin, type
III-like fold, IPR007110|Immunoglobulin-like, IPR003599|Immunoglobulin
subtype, IPR013162|CD80-like, immunoglobulin C2-set
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80010.1 68414.m09362 far-red impaired responsive protein, pu...    30   5.6  
At5g56350.1 68418.m07033 pyruvate kinase, putative similar to py...    29   7.5  
At2g04235.1 68415.m00411 expressed protein weak similarity to ne...    29   7.5  
At4g23380.1 68417.m03371 hypothetical protein predicted proteins...    29   9.9  

>At1g80010.1 68414.m09362 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 696

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 365 NRQDDVGAVHGEAETVTCVVEASPEP-MQFSWTFADSKTLYTSVKKVSGHNHRYMSSLTW 423
           N +++ G          C++   P P M+F  ++ D+ + Y S  +  G   R  SS T 
Sbjct: 43  NHEEETGCDENAFANEKCLMAPPPTPGMEFE-SYDDAYSFYNSYARELGFAIRVKSSWTK 101

Query: 424 KPREEDLGQLVC 435
           +  +E  G ++C
Sbjct: 102 RNSKEKRGAVLC 113


>At5g56350.1 68418.m07033 pyruvate kinase, putative similar to
           pyruvate kinase, cytosolic isozyme [Nicotiana tabacum]
           SWISS-PROT:Q42954
          Length = 498

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 112 CHDGTALLLKHVSDDDAGTYRCRVHYQASPSVDHVVDLK--LVDSPGAPKIYNENNELIK 169
           C DGT  LL    D + GT RCR    A       V+L   +VD P   +   +  ++++
Sbjct: 131 CADGTISLLVLSCDKENGTVRCRCENSAMLGERKNVNLPGVVVDLPTLTE--KDKEDIMQ 188

Query: 170 LGYVGPISLGANLTFVCKVAD 190
            G    I + A L+FV K +D
Sbjct: 189 WGVPNQIDMIA-LSFVRKGSD 208


>At2g04235.1 68415.m00411 expressed protein weak similarity to
            neurofilament protein (GI:161292) [Loligo pealei]; weak
            similarity to Glucoamylase S1/S2 precursor (EC 3.2.1.3)
            (Glucan 1,4-alpha- glucosidase) (1,4-alpha-D-glucan
            glucohydrolase) (Swiss-Prot:P08640) [Saccharomyces
            cerevisiae]
          Length = 1226

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 461  PECVVIRSYPNVLRVQCKKAWNGGRPQTVHLEIVDESGKLLHNVTDPAGHFHVTDI 516
            PE  V  ++ ++   +  + + GG      LEI  ++  LLHN+ D A  FH+  +
Sbjct: 1067 PEMNVSIAFNSMFNAEDSRRYIGG--SNTLLEITQKTSLLLHNLLDVAEEFHLAQM 1120


>At4g23380.1 68417.m03371 hypothetical protein predicted proteins,
           Arabidopsis thaliana
          Length = 400

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 141 PSVDH-VVDLKLVDSPGAPKIYNENNELIKLGY-VGPISLGANL-TFVCKVADDQPKTLV 197
           P V H  V L  +   G PKI  E    I +G+ V P+    ++  +    AD   KT  
Sbjct: 185 PQVSHDQVSLATMAIAGGPKI--EQLASISVGWMVNPLLYQDHIHLYTYWTADGYNKTGC 242

Query: 198 YWRRNGAVIKRAEAARSGLLIAEIRVVNATRNELD 232
           Y  R    ++ ++    G+L+  I V N T+ E+D
Sbjct: 243 YDIRCPGFVQVSKRIPLGVLLQPISVYNGTQKEMD 277


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.135    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,919,309
Number of Sequences: 28952
Number of extensions: 682051
Number of successful extensions: 1285
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1284
Number of HSP's gapped (non-prelim): 4
length of query: 664
length of database: 12,070,560
effective HSP length: 86
effective length of query: 578
effective length of database: 9,580,688
effective search space: 5537637664
effective search space used: 5537637664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)