Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002118-TA|BGIBMGA002118-PA|undefined
(197 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 28 1.1
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T... 27 1.4
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 4.3
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 25 5.7
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 25 5.7
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 7.5
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 25 7.5
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 25 7.5
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M... 25 9.9
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.9
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 25 9.9
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 13 SGNPNFNFAQQYQHPEYPTSVYGVPEGSNQMYMPTASNLYPFEDGAA 59
S +PN + A Q Y S+ VP SN + P+ NL P A+
Sbjct: 286 SSSPNSDDAYSPQVDSYSPSINSVPYTSNIVENPSEDNLSPLPPPAS 332
>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 27.5 bits (58), Expect = 1.4
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 10 DLNSGNPNFNFAQQYQHPEYPTSVYGVPE--GSNQMYMPTASNLYPFEDGAAPIQSPIDI 67
D+N+ P N Q Q PE + V E ++ +PT NL P ++SP +
Sbjct: 3 DINNNEPAENIEQPKQEPEDGNNSMSVDEQPETSSTNLPTGDNLAPMS-----VESPAHL 57
Query: 68 RSE 70
+E
Sbjct: 58 NNE 60
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 16 PNFNFAQQYQHPEYPTSVYGVP 37
P F+ QYQ+P YP ++ P
Sbjct: 443 PMQQFSPQYQYPSYPYPMFPAP 464
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 141 SSAPLDRRFPSDRRVVGSERGVPPPHPSFFADGAED 176
+SAP P V G G P H F DGA D
Sbjct: 40 ASAPGSGDLPKVTLVSGGGSGHEPTHAGFVGDGALD 75
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 79 IPAPQYPSMHHVPRTEVTWPVGPMPP 104
+ AP YPSM VP T P P+ P
Sbjct: 263 LAAPVYPSMKDVPNNPFT-PFSPINP 287
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.0 bits (52), Expect = 7.5
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 12 NSGNPNFNFAQQYQHPEYPTSVYGVPEGSNQMYMPTASNLYPFE 55
N+GN N N + QYQ V P+ PT S ++ F+
Sbjct: 66 NNGNGNSNVSTQYQRLTPREHVLRRPDTYIGSIEPTTSEMWVFD 109
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 72 RSDIRVNIPAPQYPSMHHVPRTEVTWPVGPMPPI 105
R +R+ P P+Y + +H+P + +P P +
Sbjct: 164 RYTVRMKAPTPKYSTDNHLPSKKELFPRETKPQV 197
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 67 IRSELRSDIRVNIPAPQYPSMHHVPRTEVTWPVG 100
+ S L D++ ++P P+ S+ RT +++P G
Sbjct: 509 LSSRLLHDLKDHLPVPEIESIFRDLRTALSYPQG 542
>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 155
Score = 24.6 bits (51), Expect = 9.9
Identities = 19/85 (22%), Positives = 27/85 (31%)
Query: 81 APQYPSMHHVPRTEVTWPVGPMPPISQMSXXXXXXXXXXXXXTDVYAFENIRDALPTVAR 140
+P P +VP T T P+G S ++ E P
Sbjct: 61 SPTSPQSAYVPATVYTSPIGSPRRGSVRYTHVMAHPNTTTTVSENLPEEVPPPYSPAATA 120
Query: 141 SSAPLDRRFPSDRRVVGSERGVPPP 165
S+ P + P+ V ER PP
Sbjct: 121 SNTPQNEASPAATEAVNHERPASPP 145
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 24.6 bits (51), Expect = 9.9
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 84 YPSMHHVPRTEVTWPVGPMPPISQMSXXXXXXXXXXXXXTDVYAFENIRDALPTVARSSA 143
Y + +P P+ P+PP ++S T ++ P
Sbjct: 173 YTASSPLPTASANAPL-PVPPPRRVSQNSSYASGSVPAATAASTASPVKKPPPPAPPKPR 231
Query: 144 PLDRRFPSDRRVVGSERGVPPP 165
L R S+ V S VPPP
Sbjct: 232 RLAARTSSNSSGVSSPTSVPPP 253
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 24.6 bits (51), Expect = 9.9
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 2 PSGPRRIYDLNSGNPNFNFAQQYQHPE-YPTSVYGVPEGSNQMYMPTASNLYPFEDGAAP 60
P+ P I NSG N+N AQ Q P+ + YG P Q P + Y + + A
Sbjct: 91 PNDPA-IIGSNSGQYNWNQAQTAQPPQPVQPNPYGAP---YQQAPPAGAPYYMYPNAPAQ 146
Query: 61 IQSP 64
P
Sbjct: 147 FVPP 150
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.134 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 888,632
Number of Sequences: 5004
Number of extensions: 35774
Number of successful extensions: 86
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 11
length of query: 197
length of database: 2,362,478
effective HSP length: 69
effective length of query: 128
effective length of database: 2,017,202
effective search space: 258201856
effective search space used: 258201856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)
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