Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002118-TA|BGIBMGA002118-PA|undefined
(197 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 32 0.27
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 32 0.27
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 31 0.62
03_06_0721 - 35742380-35742736,35743206-35743398,35743497-357435... 30 1.1
01_01_0754 - 5823076-5823089,5823797-5823911,5823992-5824045,582... 29 1.9
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 29 3.3
12_01_0877 - 8415186-8415272,8415696-8416310 28 5.8
>03_02_0594 -
9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 32.3 bits (70), Expect = 0.27
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 11 LNSGNPNFNFAQQYQHPEYPTSVYGVPEGSNQMYMPTASNLYPFEDGAAPIQSPIDIRSE 70
+ SGN + N QY P + + P+ S+ P+AS+L+ + PIQ P S
Sbjct: 908 ITSGNIDVNSNVQYTSPYRDEAPHLTPQPSDIRRTPSASSLHSYY--LPPIQQP----SA 961
Query: 71 LRSDIRVNIPAPQYPSMHHVPRTEVTWPVGPM 102
++ + + + P H+ R +T +GP+
Sbjct: 962 PQAQKQRRMQRQKQPQPSHIVRPSLTPNLGPL 993
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 32.3 bits (70), Expect = 0.27
Identities = 28/107 (26%), Positives = 39/107 (36%), Gaps = 4/107 (3%)
Query: 1 MPSGPRRIYDLNSGNPNFNFAQQYQHPEYPTSVYGVPEGSNQMYMPTASNLY--PFEDGA 58
+P+ PR Y P QQYQ P P P Q P Y P + G
Sbjct: 315 VPALPRDPYYAPPAQPTETMHQQYQAPPVPQP-QAPPAPPQQYQTPPQFPQYSQPPQSGM 373
Query: 59 APIQSPIDIRSELRSDIRVNIPAPQ-YPSMHHVPRTEVTWPVGPMPP 104
+P+ + + + ++ PQ YP P + P GP PP
Sbjct: 374 VNPSTPLPPAAPQQPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPP 420
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 31.1 bits (67), Expect = 0.62
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 22 QQYQHPEYPTSVYGVPEGSNQMYMPTASNLYPFEDGAAPIQSPID--IRSELRSDIRVNI 79
QQ +PT VP + Q + A P +G P Q +D I L + +V
Sbjct: 2364 QQVSPDNHPTDYSAVPRVAAQEQVSHAPQTSPGREGITPAQREMDSPISDALPASAKVQE 2423
Query: 80 PAPQYPSMHHV 90
PAP +M V
Sbjct: 2424 PAPDKSTMPFV 2434
>03_06_0721 -
35742380-35742736,35743206-35743398,35743497-35743552,
35745951-35746727
Length = 460
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 58 AAPIQSPIDIRSELRSDIRVNIPAPQYPSMHHVPRTEVTWPV 99
A+ +Q P RS+ D++ P Y + H VPR E W V
Sbjct: 244 ASGMQQPWMERSKGWQDLKYETAEPMYNTKHAVPRRESPWKV 285
>01_01_0754 -
5823076-5823089,5823797-5823911,5823992-5824045,
5825629-5827251
Length = 601
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 138 VARSSAPLDRRFPSDRRVVGSERGVPPPHPSFF 170
+A +AP RFPS R+ + PPP +FF
Sbjct: 22 IAPLAAPRRSRFPSTLRLASFDASPPPPPTTFF 54
>01_06_1801 - 39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 138 VARSSAPLDRRFPSDRRVVGSERGVPPPHPSFF 170
V + +DR PSD R G PPP P+ F
Sbjct: 1608 VKHAEPSIDRAHPSDERFRGQSLPPPPPLPASF 1640
>12_01_0877 - 8415186-8415272,8415696-8416310
Length = 233
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 68 RSELRSDIRVNIPAPQYPSMHHVPRTEVTWPVGPMPP 104
R+E+ DI +P + P PR P P+PP
Sbjct: 144 RTEITDDIEATLPKKEEPKPPSPPREAEPEPEPPLPP 180
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.134 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,000,836
Number of Sequences: 37544
Number of extensions: 252270
Number of successful extensions: 567
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 8
length of query: 197
length of database: 14,793,348
effective HSP length: 78
effective length of query: 119
effective length of database: 11,864,916
effective search space: 1411925004
effective search space used: 1411925004
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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