GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002118-TA|BGIBMGA002118-PA|undefined
         (197 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37265| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)              31   0.83 
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_23439| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.00066)           30   1.5  
SB_8007| Best HMM Match : HisKA_3 (HMM E-Value=4.2)                    30   1.5  
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    29   2.5  
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            29   3.4  
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_50531| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_32105| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      28   5.9  
SB_6201| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  
SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   5.9  
SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_53697| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_37265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 19  NFAQQYQHPE--YPTSVY-GVPEGSNQMYMPTASNLYPFEDGAAPIQSPID 66
           N + QY HPE  +P S+   +P G N+     +S+   F+  A P Q  ID
Sbjct: 69  NSSLQYVHPESNHPPSITKNIPAGINRRLSALSSDQASFDQTAPPYQKAID 119


>SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 922

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 19  NFAQQYQHPE--YPTSVY-GVPEGSNQMYMPTASNLYPFEDGAAPIQSPID 66
           N + QY HPE  +P S+   +P G N+     +S+   F+  A P Q  ID
Sbjct: 685 NSSLQYVHPESNHPPSITKNIPAGINRRLSALSSDQASFDQTAPPYQKAID 735


>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
          Length = 1230

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 27  PEYPTSVYGVPEGSNQM--YMPTASNLYPFEDGAAPIQSPIDIRSELRSDIRVNIPAPQY 84
           P+ P   +  PE ++QM        NL P+E  A P Q P  +  + +S  +   P  Q 
Sbjct: 854 PDEPEQAFFTPEPASQMNSQFNDQPNLAPYEPFARPQQPPAPMPPQQQSPYQPPAPTMQQ 913

Query: 85  PSM 87
           P +
Sbjct: 914 PQL 916


>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 19   NFAQQYQHPE--YPTSVY-GVPEGSNQMYMPTASNLYPFEDGAAPIQSPID 66
            N + QY H E  +P S+   +P G N+     +S+   F+  A P Q P+D
Sbjct: 1148 NSSLQYVHRESNHPPSITKNIPAGINRRLSALSSDQASFDQTAPPYQKPLD 1198


>SB_23439| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.00066)
          Length = 417

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 7   RIYDLNSGNPNFNFAQQYQHPEYPTSVY-GVPEGSNQMYMPTASNLYPFEDGAAPIQSPI 65
           R+ DL    PN +    ++   +P S+   +P G N+     +S+   F+  A P Q  +
Sbjct: 170 RMVDLPYTKPNSSLQYVHRESNHPPSITKNIPAGINRRLSALSSDQASFDQTAPPYQKAL 229

Query: 66  D 66
           D
Sbjct: 230 D 230


>SB_8007| Best HMM Match : HisKA_3 (HMM E-Value=4.2)
          Length = 178

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 3   SGPRRIYDLNSGNPNFNFAQQYQHPEYPTSVYG--VPEGSNQMYMPTASNLYPFEDGAAP 60
           SG  +  DL++ N +    Q    P  P +     +P       +P +SN  P  +   P
Sbjct: 68  SGSTKTLDLSNPNSDHPANQVKSEPRVPHNSKRPLLPLSQTDSRVPLSSNTVPPAENTDP 127

Query: 61  IQSPIDIRSELRSDIRVNIPAPQ 83
           I    D+ +E  S  R+ +P P+
Sbjct: 128 ITRLADLLAERNSCHRLPLPEPK 150


>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 42  QMYMPTASNLYPFEDGAAPIQSP--IDIRSELRSDIRVNIPAPQYPSMHHVPRTEVTWPV 99
           ++ +  A NLY   +   P   P  +D+  +L+  ++  +   Q  + H   +T+  +PV
Sbjct: 118 ELSLSDAKNLYSGIEVCIPSAVPPVLDVMEKLKQQLKSELEKYQSSAQHLPQKTKEDFPV 177

Query: 100 GPMP 103
            P+P
Sbjct: 178 KPLP 181


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 133  DALPTVARSSAPLD-RRFPSDRRVVGSERGVPPPHPSF 169
            DA+  V +   PLD  R+P+   ++G+  G  PPH  +
Sbjct: 2449 DAVQGVVKVKTPLDYERYPNYTLIIGAYDGSVPPHVGY 2486


>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 3   SGPRRIYDLNSGNPNFNFAQQYQHPEYPTSVYGVPEGSNQMYMPTASNLYPFEDGAAPIQ 62
           + PR  +   +  P +   + +Q P  P   Y  P       +P  +          P+ 
Sbjct: 499 TSPREHHSPRTPLPTYTSPRVHQSPRTPVPAYFTPR-----VLPAYTTPRVHHSPRTPV- 552

Query: 63  SPIDIRSELRSDIRVNIPAPQYPSMHHVPRTEV 95
            P      +    R  +PA   P +HH PRT V
Sbjct: 553 -PAYTTPRVHHSPRTPLPAYTSPRVHHSPRTPV 584



 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/78 (21%), Positives = 26/78 (33%)

Query: 16  PNFNFAQQYQHPEYPTSVYGVPEGSNQMYMPTASNLYPFEDGAAPIQSPIDIRSELRSDI 75
           P +   + +  P  P   Y  P   +    P  +   P    +     P      +    
Sbjct: 537 PAYTTPRVHHSPRTPVPAYTTPRVHHSPRTPLPAYTSPRVHHSPRTPVPAYTTPRVLHSP 596

Query: 76  RVNIPAPQYPSMHHVPRT 93
           R  +PA   P +HH PRT
Sbjct: 597 RTPVPAYTSPRVHHSPRT 614


>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 13  SGNPNFNFAQQYQHPEYPTSVYGVPEGSNQMYMPTASNLYPFEDGAAPIQSPIDIRSELR 72
           S   ++    Q  +P  P   Y  P  S Q Y+PT+   YP     +   SP   +S  +
Sbjct: 297 SAQQSYPPTSQQSYPPTPQQSY--PLTSQQSYLPTSQQSYPPTSQQSYPPSP--QQSYPQ 352

Query: 73  SDIRVNIPAPQYPS 86
           + I+ N P  Q P+
Sbjct: 353 TSIQQNFPPTQPPN 366


>SB_50531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 26  HPEYPTSVYGVPEGSNQMYMPTASNLYPFEDGAAPIQSPIDIRSELRSDIRVNIPAPQYP 85
           +P     +Y  P  SN  Y   ++++YP       +   IDI   + +DI  ++    YP
Sbjct: 62  YPHVSNDIY--PHVSNNTYPHVSNDIYPHVSHDTYLHLSIDIYPHVSNDIYPHVSNDIYP 119

Query: 86  SM 87
           ++
Sbjct: 120 NV 121


>SB_32105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 11 LNSGNPNFNFA-QQYQHPEYPTSVYGVPEGSNQMYMPTASNLYPFEDGAAPIQSPID 66
          + S  P +N +  +  HP  P+    +P G N+     +S+   F+  A P Q  +D
Sbjct: 6  IQSRTPRYNMSTDESNHP--PSITKNIPAGINRRLSALSSDQASFDQTAPPYQKALD 60


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 29  YPTSVYGVPEGSNQMYMPTASNLYPFEDGAAPIQSPID 66
           +P     +PE      MPT   LY  E  + P +SP+D
Sbjct: 873 FPFRKVFLPEELRLALMPTLEKLYKQEPESLPFRSPVD 910


>SB_6201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 46  PTASNLYPFEDGAAPIQSP----IDIRSELRSDIRVNIPAPQYPSMHHVPRTEVTWPVGP 101
           P++S L P  D  +P  SP    ID  S   S +   I A    S   +PR +   P   
Sbjct: 60  PSSSPLLPRIDADSPSSSPLLPRIDADSPSSSPLLPRIDADSPSSSPLLPRVDADSPSSS 119

Query: 102 MPPISQ 107
           +PP  Q
Sbjct: 120 LPPPPQ 125


>SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1554

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/48 (25%), Positives = 26/48 (54%)

Query: 128 FENIRDALPTVARSSAPLDRRFPSDRRVVGSERGVPPPHPSFFADGAE 175
           ++N +  + + + ++ P+  + PSD  +  S +G P P  ++  DG E
Sbjct: 226 YKNEKPVITSHSSTTGPVTMQEPSDVEIFCSFQGYPQPKNTWSKDGTE 273


>SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 3   SGPRRIYDLNSGNPNFNFAQQYQHPEYPTSVYG--VPEGSNQMYMPTASNLYPFEDGAAP 60
           SG  +  DL++ N +    Q    P  P +     +P       +P +SN  P      P
Sbjct: 48  SGSTKTLDLSNPNSDHPANQVKFEPRVPHNSKRPLLPLSQTDSRVPLSSNTVPPAVNTDP 107

Query: 61  IQSPIDIRSELRSDIRVNIPAPQ 83
           I    D+ +E  S  R+ +P P+
Sbjct: 108 ITRLADLLAERNSRDRLPLPEPE 130


>SB_53697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 519

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 72  RSDIRVNIPAPQYPSMHHVPRT 93
           R ++R+ +P    P MHHVP T
Sbjct: 215 RGEVRLAVPWMFLPRMHHVPHT 236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,472,152
Number of Sequences: 59808
Number of extensions: 254838
Number of successful extensions: 816
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 793
Number of HSP's gapped (non-prelim): 35
length of query: 197
length of database: 16,821,457
effective HSP length: 79
effective length of query: 118
effective length of database: 12,096,625
effective search space: 1427401750
effective search space used: 1427401750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)