Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002118-TA|BGIBMGA002118-PA|undefined
(197 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55374-6|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated p... 30 0.96
U55374-5|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 30 0.96
U55374-4|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 30 0.96
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 30 0.96
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr... 29 1.7
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 28 3.9
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 28 3.9
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 28 3.9
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 28 3.9
L26987-1|AAA62312.1| 627|Caenorhabditis elegans par-2 protein. 28 5.1
AF106580-1|AAK73890.3| 582|Caenorhabditis elegans Abnormal embr... 28 5.1
AF039047-10|AAB94230.1| 354|Caenorhabditis elegans Prion-like-(... 27 6.7
Z70686-1|CAA94609.1| 222|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical pr... 27 8.9
AL021469-2|CAA16289.2| 92|Caenorhabditis elegans Hypothetical ... 27 8.9
AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin ... 27 8.9
>U55374-6|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated
protein 2, isoform d protein.
Length = 286
Score = 30.3 bits (65), Expect = 0.96
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 3 SGPRRIYDLNSGNPNFNFAQQYQH-PEYPTSVYGVPEGSNQMYMPTASNLY 52
+G +R Y + + + +QQ QH P Y TS P S+ Y P +S Y
Sbjct: 172 TGYQRDYHTSHSHSHHPTSQQQQHQPMYSTSPLISPRSSHSYYTPRSSQYY 222
>U55374-5|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 30.3 bits (65), Expect = 0.96
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 3 SGPRRIYDLNSGNPNFNFAQQYQH-PEYPTSVYGVPEGSNQMYMPTASNLY 52
+G +R Y + + + +QQ QH P Y TS P S+ Y P +S Y
Sbjct: 1812 TGYQRDYHTSHSHSHHPTSQQQQHQPMYSTSPLISPRSSHSYYTPRSSQYY 1862
>U55374-4|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 30.3 bits (65), Expect = 0.96
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 3 SGPRRIYDLNSGNPNFNFAQQYQH-PEYPTSVYGVPEGSNQMYMPTASNLY 52
+G +R Y + + + +QQ QH P Y TS P S+ Y P +S Y
Sbjct: 1913 TGYQRDYHTSHSHSHHPTSQQQQHQPMYSTSPLISPRSSHSYYTPRSSQYY 1963
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 30.3 bits (65), Expect = 0.96
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 3 SGPRRIYDLNSGNPNFNFAQQYQH-PEYPTSVYGVPEGSNQMYMPTASNLY 52
+G +R Y + + + +QQ QH P Y TS P S+ Y P +S Y
Sbjct: 1913 TGYQRDYHTSHSHSHHPTSQQQQHQPMYSTSPLISPRSSHSYYTPRSSQYY 1963
>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
protein T13F2.3b protein.
Length = 1076
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/53 (32%), Positives = 21/53 (39%)
Query: 14 GNPNFNFAQQYQHPEYPTSVYGVPEGSNQMYMPTASNLYPFEDGAAPIQSPID 66
GNP + QQ+ H E P G P MP ++ P G P P D
Sbjct: 100 GNPPQHQQQQFFHGESPAHSQGTPMTPQSAGMPGSNCGTPQSAGGPPTSVPYD 152
>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
protein T13F2.3a protein.
Length = 1074
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/53 (32%), Positives = 21/53 (39%)
Query: 14 GNPNFNFAQQYQHPEYPTSVYGVPEGSNQMYMPTASNLYPFEDGAAPIQSPID 66
GNP + QQ+ H E P G P MP ++ P G P P D
Sbjct: 98 GNPPQHQQQQFFHGESPAHSQGTPMTPQSAGMPGSNCGTPQSAGGPPTSVPYD 150
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/80 (18%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 1 MPSGPRRIYDLNSGNPNFNFAQQYQHPEYPTSVYGVPEGSNQMYMPTASNLYPFEDGAAP 60
+ P++ +D+N +++F +Y +V G EG+ ++ + + F +G
Sbjct: 3399 LDQNPKK-FDVNGQTTDYHFRHLDSVTQYNVTVQGTSEGNKLWFISSVFSTTDFAEGLLN 3457
Query: 61 -IQSPIDIRSELRSDIRVNI 79
+ +P D+ +SD +++
Sbjct: 3458 WLPAPTDLHLIEKSDTMLHV 3477
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/80 (18%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 1 MPSGPRRIYDLNSGNPNFNFAQQYQHPEYPTSVYGVPEGSNQMYMPTASNLYPFEDGAAP 60
+ P++ +D+N +++F +Y +V G EG+ ++ + + F +G
Sbjct: 3399 LDQNPKK-FDVNGQTTDYHFRHLDSVTQYNVTVQGTSEGNKLWFISSVFSTTDFAEGLLN 3457
Query: 61 -IQSPIDIRSELRSDIRVNI 79
+ +P D+ +SD +++
Sbjct: 3458 WLPAPTDLHLIEKSDTMLHV 3477
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/80 (18%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 1 MPSGPRRIYDLNSGNPNFNFAQQYQHPEYPTSVYGVPEGSNQMYMPTASNLYPFEDGAAP 60
+ P++ +D+N +++F +Y +V G EG+ ++ + + F +G
Sbjct: 3399 LDQNPKK-FDVNGQTTDYHFRHLDSVTQYNVTVQGTSEGNKLWFISSVFSTTDFAEGLLN 3457
Query: 61 -IQSPIDIRSELRSDIRVNI 79
+ +P D+ +SD +++
Sbjct: 3458 WLPAPTDLHLIEKSDTMLHV 3477
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/80 (18%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 1 MPSGPRRIYDLNSGNPNFNFAQQYQHPEYPTSVYGVPEGSNQMYMPTASNLYPFEDGAAP 60
+ P++ +D+N +++F +Y +V G EG+ ++ + + F +G
Sbjct: 3399 LDQNPKK-FDVNGQTTDYHFRHLDSVTQYNVTVQGTSEGNKLWFISSVFSTTDFAEGLLN 3457
Query: 61 -IQSPIDIRSELRSDIRVNI 79
+ +P D+ +SD +++
Sbjct: 3458 WLPAPTDLHLIEKSDTMLHV 3477
>L26987-1|AAA62312.1| 627|Caenorhabditis elegans par-2 protein.
Length = 627
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 12 NSGNPNFNFAQQYQHPEYPTSVYGVPEGSNQMYMP 46
+SG +F Q PE+PT + VPEG + +P
Sbjct: 293 SSGKEQKSFRVFAQIPEHPTEHHDVPEGDVEHLLP 327
>AF106580-1|AAK73890.3| 582|Caenorhabditis elegans Abnormal
embryonic partitioningof cytoplasm protein 2, isoform b
protein.
Length = 582
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 12 NSGNPNFNFAQQYQHPEYPTSVYGVPEGSNQMYMP 46
+SG +F Q PE+PT + VPEG + +P
Sbjct: 248 SSGKEQKSFRVFAQIPEHPTEHHDVPEGDVEHLLP 282
>AF039047-10|AAB94230.1| 354|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 51
protein.
Length = 354
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 74 DIRVNIPAPQYPSMHHVPRTEV-TWPVGPMPPISQ 107
D+ N P P HHVP + V P+ P P++Q
Sbjct: 54 DLESNAPPPAPRQQHHVPPSAVRPNPMPPQRPVAQ 88
>Z70686-1|CAA94609.1| 222|Caenorhabditis elegans Hypothetical
protein R10H10.1 protein.
Length = 222
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 23 QYQHPEYPTSVYGVPEGSNQMYMPTASNLYPFEDGAAPIQSPIDIR 68
Q Q P S+ +P Q +P AS Y F A QSP+ I+
Sbjct: 19 QVQETPNPLSLKFLP---GQQLLPDASKTYDFSSAATAKQSPLAIK 61
>Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical
protein F44A6.1a protein.
Length = 453
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 4 GPRRIY---DLNSGNPNFNFAQQYQHPEYPTSVYGVPEGSNQMYMPTASNLYPFEDGAAP 60
G +++Y +L + Q+ QHP+ +V P+ Q++ P + P P
Sbjct: 351 GQKKVYTDEELQQFEREYAQKQEQQHPQ--EAVQQPPQAQQQVH-PAQQPIQPVNANPPP 407
Query: 61 IQS---PIDIRSELRSDIRVNIPAPQYPSMHHVP 91
+Q+ P+ + + P P +HH P
Sbjct: 408 VQNAQPPVQQQQQPPQQPPQQPPQQNLPPVHHEP 441
>AL021469-2|CAA16289.2| 92|Caenorhabditis elegans Hypothetical
protein Y116A8B.4 protein.
Length = 92
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 26 HPEYPTSVYGVPEGSNQMYMPTASNLYPFEDG 57
HPEY S + P SN+ P + P G
Sbjct: 37 HPEYSNSTFNSPGSSNESQRPNYYQIQPPSPG 68
>AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin
protein.
Length = 456
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 4 GPRRIY---DLNSGNPNFNFAQQYQHPEYPTSVYGVPEGSNQMYMPTASNLYPFEDGAAP 60
G +++Y +L + Q+ QHP+ +V P+ Q++ P + P P
Sbjct: 354 GQKKVYTDEELQQFEREYAQKQEQQHPQ--EAVQQPPQAQQQVH-PAQQPIQPVNANPPP 410
Query: 61 IQS---PIDIRSELRSDIRVNIPAPQYPSMHHVP 91
+Q+ P+ + + P P +HH P
Sbjct: 411 VQNAQPPVQQQQQPPQQPPQQPPQQNLPPVHHEP 444
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.134 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,943,644
Number of Sequences: 27539
Number of extensions: 210566
Number of successful extensions: 541
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 21
length of query: 197
length of database: 12,573,161
effective HSP length: 78
effective length of query: 119
effective length of database: 10,425,119
effective search space: 1240589161
effective search space used: 1240589161
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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