Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002117-TA|BGIBMGA002117-PA|undefined
(151 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 35 0.006
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 32 0.033
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 28 0.53
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 28 0.70
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 27 1.6
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 2.1
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1... 25 4.9
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 25 6.5
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 34.7 bits (76), Expect = 0.006
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 48 SRKESNHNQCNPRESNRNRCNPKEPHCNLCNPKECNLNRCNLRESSHNRYNPKESNRNRC 107
SR +N N N R +R+ +EP + NLN ES + + N NR
Sbjct: 1431 SRSFTNENNDNLRSVSRH--TRREPQ------QAQNLNARREHESQKSDRWRQNGNVNR- 1481
Query: 108 NPRVSNHNQCKPKESKRNRCNPRDCNRSHRD 138
NPRVSN+N + + N R N + RD
Sbjct: 1482 NPRVSNNNSTNVSRERSSEANHRTSNDNKRD 1512
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.3 bits (70), Expect = 0.033
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 42 CRLNRCSRKESNHNQCNPRESNRNRCNPKEPHCNLC-NPK-ECNLNRCNLRESSHNRYNP 99
C LN S+ N + E C K+ H NL NP N+N SHN Y P
Sbjct: 50 CTLNDSEDDNSSLNSVDNNECTNLDCGGKK-HKNLSPNPSFHVNINAAEFIPKSHNGYAP 108
Query: 100 KESN 103
K N
Sbjct: 109 KSMN 112
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 28.3 bits (60), Expect = 0.53
Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 36 YLPCRECRLNRCSRKESNHNQCNPRESNRNRCNPKEPHCNLCNPKECNLNRCNLRESSHN 95
+LP + N ++ H + + ++ + P ++ NL+R + S H
Sbjct: 250 FLPVKPLESNSALNSQNEHTEVQKKSNSIDNLTPSSELFRK-RSRDNNLSRESSVSSKHL 308
Query: 96 RYNPKESNRNRCNPRVSNHNQCKPKESKRNR 126
YN + N+ +P + + + + K++R
Sbjct: 309 DYNSRNYNKRDRDPDRTKYREYHSERRKQHR 339
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 27.9 bits (59), Expect = 0.70
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 93 SHNRYNPKESNRNRCNPRVSNHNQCKPKESKRNRCNPRDCNRSHRDYGPCRLPLWKCP 150
S + YN + S+R +PR + ++ S+ + R R+HR P K P
Sbjct: 125 SRSPYNDERSDRRSMSPRYRSRSRSPDGRSRSPDYDRRSPKRNHRSPSPVSFAPQKSP 182
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 26.6 bits (56), Expect = 1.6
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 39 CRECRLNRCSRKESNHNQCNPRESNRNRCNPKEPHCNLCNPKECNLNRCNLRESSHNRYN 98
C +CR+ R +R CN R+ ++C+ +L + N + C++ S +
Sbjct: 43 CEKCRIARITRHLHVKCTCNSRKKG-SKCSTSST-TDLDSSSASN-SSCSIPSSISEKLL 99
Query: 99 PKESNRNRCNPRVSNHNQCKP 119
P+++ + C R ++ KP
Sbjct: 100 PRDNVKTHCPKRSASCCGKKP 120
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 26.2 bits (55), Expect = 2.1
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 44 LNRCSRKESNHNQCNPRESNRNRCNPKEPHCNLCNPKECNLNRCNLRESSHNRYNPK-ES 102
L C++ + + N ES + C P P N P+ N R N+ +R + K ES
Sbjct: 657 LKNCAKSKDDSTTQNLTESLGSVCYPSMPFFNQYVPQNPNEVRENISSVMKSRIHAKFES 716
Query: 103 NRNRCNPRVSN 113
+R V N
Sbjct: 717 LHSRVELVVKN 727
>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 283
Score = 25.0 bits (52), Expect = 4.9
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 68 NPKEPHCNLCNPKECNLNRCNLRESSHNRYNPKESN 103
+P +P +E + LR + N Y PK+ N
Sbjct: 236 SPAKPQAQSMRGREARIAAALLRVDNSNEYKPKDHN 271
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 24.6 bits (51), Expect = 6.5
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 46 RCSRKESNHNQCNPRESN--RNRCNPKEPH 73
R S SN C E+ RC+P EPH
Sbjct: 18 RTSSPSSNFKTCVSNENGCINCRCSPSEPH 47
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.135 0.476
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 806,530
Number of Sequences: 5004
Number of extensions: 32561
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 8
length of query: 151
length of database: 2,362,478
effective HSP length: 67
effective length of query: 84
effective length of database: 2,027,210
effective search space: 170285640
effective search space used: 170285640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)
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