Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002117-TA|BGIBMGA002117-PA|undefined
(151 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006638-7|AAK85485.2| 491|Caenorhabditis elegans Hypothetical ... 32 0.20
Z93396-1|CAB07709.1| 875|Caenorhabditis elegans Hypothetical pr... 31 0.27
AF078788-7|AAC26958.1| 227|Caenorhabditis elegans Hypothetical ... 31 0.27
AF039047-5|AAB94226.1| 186|Caenorhabditis elegans Hypothetical ... 31 0.35
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 29 1.1
U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 29 1.9
U41993-1|AAO12433.1| 390|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical pr... 28 2.5
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 28 2.5
Z11126-5|CAA77472.2| 180|Caenorhabditis elegans Hypothetical pr... 28 2.5
AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear recep... 28 2.5
AF067213-1|AAC17000.2| 462|Caenorhabditis elegans Hypothetical ... 28 2.5
Z99278-5|CAB16489.1| 290|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z83109-8|CAB05521.2| 311|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z81142-3|CAB03503.1| 583|Caenorhabditis elegans Hypothetical pr... 28 3.3
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr... 28 3.3
AF022388-1|AAC38956.1| 290|Caenorhabditis elegans putative tran... 28 3.3
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 27 5.7
U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing facto... 27 5.7
U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing facto... 27 5.7
U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor... 27 5.7
U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein. 27 5.7
Z72503-1|CAA96596.2| 617|Caenorhabditis elegans Hypothetical pr... 27 7.6
>AC006638-7|AAK85485.2| 491|Caenorhabditis elegans Hypothetical
protein F41G4.5 protein.
Length = 491
Score = 31.9 bits (69), Expect = 0.20
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 11/113 (9%)
Query: 35 SYLPCRECRLNRCSRKESNHNQCNPRESNRNRCNPKEP--HCNLCNPKEC--NLNRCNLR 90
S+ C E L +C E + N R N R +P P CNLC ++N +R
Sbjct: 97 SFTRCPE--LGKCKDLEVYFLK-NARAQNVPRKDPSLPSGRCNLCGSHYFGFDMNDHKVR 153
Query: 91 ESSHNRYNPKESNRNRCNPRVSNHNQC---KPKESKRNRCNPRDCNRSHRDYG 140
N+ +P + R + ++ C P +K C+PR C D+G
Sbjct: 154 GCPFNKLSPAQRLRFQAINNLAYCQHCHSRSPDHTKSRHCSPRKCENC-GDFG 205
>Z93396-1|CAB07709.1| 875|Caenorhabditis elegans Hypothetical
protein ZC15.1 protein.
Length = 875
Score = 31.5 bits (68), Expect = 0.27
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 58 NPRESNRNRCNPKEP--HCNLCNPKEC--NLNRCNLRESSHNRYNPKESNRNRCNPRVSN 113
N R N R +P P CNLC ++N +R N+ +P + R + ++
Sbjct: 113 NARAQNVPRKDPSLPSGRCNLCGSHYFGFDMNDHKVRGCPFNKLSPAQRLRFQAINNLAY 172
Query: 114 HNQC---KPKESKRNRCNPRDCNRSHRDYG 140
C P +K C+PR C D+G
Sbjct: 173 CQHCHSRSPDHTKSRHCSPRKCENC-GDFG 201
>AF078788-7|AAC26958.1| 227|Caenorhabditis elegans Hypothetical
protein ZC190.8 protein.
Length = 227
Score = 31.5 bits (68), Expect = 0.27
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 69 PKEPHCNLCNP------KECNLNRCNLRESSHNRYNPKESNRNRCN--PRVSNHNQCKPK 120
PK P L P KE + ++RE S N+ + KES+R+R P + N +Q + K
Sbjct: 90 PKTPPVELLKPPPFELQKEFKNSHRSVREKSGNKTHAKESSRHRYRQFPHLDNSHQTEFK 149
Query: 121 ESKRN 125
+S R+
Sbjct: 150 KSHRS 154
>AF039047-5|AAB94226.1| 186|Caenorhabditis elegans Hypothetical
protein K11D12.6 protein.
Length = 186
Score = 31.1 bits (67), Expect = 0.35
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 52 SNHNQCNPRESNRNRCNPKEPH-CNLCNPKECNLNRC-NLRESSHNRYNPKESNRNRCNP 109
+ +N +PR R RC P++ H C P N N + H+ E N+N C+
Sbjct: 58 NENNFADPRIC-RQRCIPQDHHVCPANTPSTLNTGGAKNCGKEEHDE-KCAEPNKNYCHH 115
Query: 110 RVSNHNQCKPKESKRNRCNPRD--CNRSHRDYGPCR 143
+N+ C ES++ R+ C + Y R
Sbjct: 116 GPNNNGVCCSLESRKKVDQDRELVCPNGKKKYATFR 151
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 29.5 bits (63), Expect = 1.1
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 11/144 (7%)
Query: 1 MMANINGHFQFMPGIVGVPALQHGLTPMQLAWHRSYLPCRECRLNRCSRKESNHNQCNPR 60
+ A + Q MP G+P G P S +P + + N ++ + R
Sbjct: 429 LSATVLPQHQSMPLNYGMPLFSAGFPPAV-----SSVPRPSAISDEWNAFLQNKDRNSSR 483
Query: 61 ESNRNRCNPKEPHCNLCNPKECNLNRCNLRESSHN------RYNPKESNRNRCNPRVSNH 114
+++R K+ H + + + + ++ SS + + KES++ R +
Sbjct: 484 RDHKDRTRRKDRHDSRSRRRRDSSSSSSMSSSSSDEDERRRKRREKESSKKRRSVEKERP 543
Query: 115 NQCKPKESKRNRCNPRDCNRSHRD 138
+ R+R RD +RSHRD
Sbjct: 544 RRADEHRRDRDRDRERDRDRSHRD 567
>U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical
protein F46F11.7 protein.
Length = 320
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 42 CRLNRCSRKESN----HNQCNPR---ESNRNRCNPKEPHCNLCNPKE-CNLNRC 87
CR +C + H C P + N+ + P+EP CN C P E C+ +C
Sbjct: 123 CRDGKCEKVLETFCIGHADCGPNMLCQQNKCQLKPQEPLCN-CQPHEICHHGQC 175
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 85 NRCNLRESSHNRYNPKESNRNRCNPRVSNHNQCKPKESKR-NRCNPRDCNRS 135
+R N R S +R + +R+R + R + ++ PK S+R ++ R +RS
Sbjct: 208 SRSNSRSRSRSRSRDRRRSRSRSSSRSKSRSRSPPKRSRRESKSKSRSRSRS 259
>U41993-1|AAO12433.1| 390|Caenorhabditis elegans Hypothetical
protein F44A2.5b protein.
Length = 390
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 69 PKEPHCNLCNPKEC--NLNRCNLRESSHNRYNPKESNRNRCNPRVSNH 114
PK + EC N+N L+E ++N+ + ES +R + R SNH
Sbjct: 56 PKPAAGQKLSSSECDTNVNSQILKEENNNKKDCGESTSSRASSRASNH 103
>Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical
protein C06C6.4 protein.
Length = 363
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 29 QLAWHRSYLPCRECRLNRCSRKESNHNQCN-PRESNRNRCNPKEPHCNL 76
Q+ + S+ PCRECR+ +C N + RE + + + H +L
Sbjct: 46 QIRYQNSH-PCRECRIQKCFEAGMNPEKVQVKREKHPKKLKMELAHASL 93
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
protein E01G6.1 protein.
Length = 1391
Score = 28.3 bits (60), Expect = 2.5
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 15/113 (13%)
Query: 17 GVPALQHGLTPMQLAWHRSYLPCRECRLNRCSRKESNH---NQCNP--RESNRNRCNPKE 71
G P GLT + ++ S C+ CS +N +QC S + C+
Sbjct: 369 GTPCFGRGLTIQRFYFNPSTQKCQPFHYYGCSGNGNNFETVDQCQNFCLHSADSACDGLV 428
Query: 72 PHCNLCNPKECNLNRCNLRESSHNRYNPKESN------RNRCNPRVSNHNQCK 118
P L NP L RC+ + Y +S+ N CN +S N CK
Sbjct: 429 P---LKNPNS-ELQRCSEEDPCPAGYECNDSSYCCPSSENACNANMSRGNGCK 477
>Z11126-5|CAA77472.2| 180|Caenorhabditis elegans Hypothetical
protein ZK643.6 protein.
Length = 180
Score = 28.3 bits (60), Expect = 2.5
Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 54 HNQCNPRESNRNRCNPKEPHC-NLCNPKECNLNRCNLRESSHNRYNPKESNRNRCNPRVS 112
HN NP C +L N N NRC+++E S + N CN
Sbjct: 87 HNGTNPENKTGGNGGTGTQECTDLANDCSYNQNRCSVKEYSSLMHRLCPKTCNACNICED 146
Query: 113 NHNQCKPKESKRNRCNPRD 131
+ C P R C+ D
Sbjct: 147 ANKMC-PIWVPRGFCSKFD 164
>AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear
receptor NHR-63 protein.
Length = 365
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 29 QLAWHRSYLPCRECRLNRCSRKESNHNQCN-PRESNRNRCNPKEPHCNL 76
Q+ + S+ PCRECR+ +C N + RE + + + H +L
Sbjct: 48 QIRYQNSH-PCRECRIQKCFEAGMNPEKVQVKREKHPKKLKMELAHASL 95
>AF067213-1|AAC17000.2| 462|Caenorhabditis elegans Hypothetical
protein T25B2.2 protein.
Length = 462
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 50 KESNHNQCNPRESNRNRC-NPKEPHC 74
K NQ PR + N C N + PHC
Sbjct: 287 KRERENQIRPRSQHSNSCVNQRPPHC 312
>Z99278-5|CAB16489.1| 290|Caenorhabditis elegans Hypothetical
protein Y53C12B.5a protein.
Length = 290
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 2/90 (2%)
Query: 39 CRECRLNRCSRKESNHNQCNPRESNRNRCNPKEPHCNLCNPKECNLNRCNLRESSHNRYN 98
C ++ + +E N+ C R N P++ H C +C C + E N
Sbjct: 11 CEAKAVDELAEQEKNY-YCQ-RCLNHGELKPRKGHKPDCRYLKCPCRECTMVEQRRQLNN 68
Query: 99 PKESNRNRCNPRVSNHNQCKPKESKRNRCN 128
+ C P + + ++ RC+
Sbjct: 69 LLSKKKIHCTPATQTRDGKRVRDPHCARCS 98
>Z83109-8|CAB05521.2| 311|Caenorhabditis elegans Hypothetical
protein F44G3.9 protein.
Length = 311
Score = 27.9 bits (59), Expect = 3.3
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 39 CRECRLNRCSRKESNHNQCNPRESNRN 65
C+ CR+ +C +K N N P ++ +
Sbjct: 95 CKSCRIKKCFKKGMNKNAVQPERTSHS 121
>Z81142-3|CAB03503.1| 583|Caenorhabditis elegans Hypothetical
protein ZK1037.4 protein.
Length = 583
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 33 HRSYLPCRECRLNRCSRKESNHNQCNPRESNRNRCNPKE 71
H S CR CRL +C N R+ R PK+
Sbjct: 380 HESKNSCRSCRLQKCLNVGMNPKAIQHRDPIGQRSPPKD 418
>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
protein R09H3.1 protein.
Length = 1073
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 33 HRSYLPCRECRLNRCSRKESNHNQCNPRESNRNRCNPKEPHCNLC 77
HRS+ +E N C+RKE+ C P++ + P+ C C
Sbjct: 838 HRSHHLTQELSDNNCARKEA-ETLCVPKDHPNSSGPPQWECCRFC 881
>AF022388-1|AAC38956.1| 290|Caenorhabditis elegans putative
transcription factor MAB-3 protein.
Length = 290
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 2/90 (2%)
Query: 39 CRECRLNRCSRKESNHNQCNPRESNRNRCNPKEPHCNLCNPKECNLNRCNLRESSHNRYN 98
C ++ + +E N+ C R N P++ H C +C C + E N
Sbjct: 11 CEAKAVDELAEQEKNY-YCQ-RCLNHGELKPRKGHKPDCRYLKCPCRECTMVEQRRQLNN 68
Query: 99 PKESNRNRCNPRVSNHNQCKPKESKRNRCN 128
+ C P + + ++ RC+
Sbjct: 69 LLSKKKIHCTPATQTRDGKRVRDPHCARCS 98
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 27.1 bits (57), Expect = 5.7
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 53 NHNQCNPRESNRNRCNPKEPHCNLCNPKECNLNRCNLRESSHNRYNPKESNRNRCNPRVS 112
NHNQ + NR+R + H N + N +R + NR+ + NR + + R
Sbjct: 925 NHNQ----DRNRHRNHDGNRHQNQDRSRHHNQDRNRRQNHDRNRHQSQGRNRQQDHERGD 980
Query: 113 N-HNQCKP 119
H + +P
Sbjct: 981 EAHEEARP 988
>U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
b protein.
Length = 663
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 93 SHNRYNPKESNRNRCNPRVSNHNQCKPKESKRNR-CNPRDCNRSHR 137
S + + P E + R ++ + + +R+R C+PRD +R H+
Sbjct: 585 SESGFEPVEEMKRTDEDRERKRHRKRSRSRRRSRSCSPRDRSREHK 630
>U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
a protein.
Length = 749
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 93 SHNRYNPKESNRNRCNPRVSNHNQCKPKESKRNR-CNPRDCNRSHR 137
S + + P E + R ++ + + +R+R C+PRD +R H+
Sbjct: 671 SESGFEPVEEMKRTDEDRERKRHRKRSRSRRRSRSCSPRDRSREHK 716
>U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
d protein.
Length = 751
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 93 SHNRYNPKESNRNRCNPRVSNHNQCKPKESKRNR-CNPRDCNRSHR 137
S + + P E + R ++ + + +R+R C+PRD +R H+
Sbjct: 673 SESGFEPVEEMKRTDEDRERKRHRKRSRSRRRSRSCSPRDRSREHK 718
>U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein.
Length = 749
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 93 SHNRYNPKESNRNRCNPRVSNHNQCKPKESKRNR-CNPRDCNRSHR 137
S + + P E + R ++ + + +R+R C+PRD +R H+
Sbjct: 671 SESGFEPVEEMKRTDEDRERKRHRKRSRSRRRSRSCSPRDRSREHK 716
>Z72503-1|CAA96596.2| 617|Caenorhabditis elegans Hypothetical
protein C26C6.3 protein.
Length = 617
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 40 RECRLNRCSRKESNHNQCNPRESNRNR-CNPKEPHCNLCNPKECNLN 85
R CR +C + CN + ++ C + LCN K C N
Sbjct: 533 RSCRSKKCEGRRQEFGTCNLKACPVDKHCAKLLSNNRLCNGKVCTKN 579
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.321 0.135 0.476
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,696,120
Number of Sequences: 27539
Number of extensions: 214289
Number of successful extensions: 871
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 853
Number of HSP's gapped (non-prelim): 41
length of query: 151
length of database: 12,573,161
effective HSP length: 75
effective length of query: 76
effective length of database: 10,507,736
effective search space: 798587936
effective search space used: 798587936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
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