GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002116-TA|BGIBMGA002116-PA|IPR001841|Zinc finger,
RING-type
         (418 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   5.4  
AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochr...    22   9.4  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   9.4  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 222 VMFVVQRLEPHFPQASKTSIGHVVQLLYRASCFK 255
           ++F  + +E   P   KTS  H  Q L R   FK
Sbjct: 188 ILFSAEGVEIRIPDVIKTSGPHKFQPLLRLPKFK 221


>AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q2 protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 15/68 (22%), Positives = 27/68 (39%)

Query: 268 LKEEFRTYDSLRREHDAQIVQIATESGLRIAPDQWSALLYGDTAHKSHMQSIIDKLQTPQ 327
           +KE  R Y S+     A    + T+ G  I  D  + +   D  H   +    +K    +
Sbjct: 52  IKESLRLYPSVHLISRALGEDVRTQKGYLIPKDTITIIHIYDLHHNPDIYPDPEKFDPDR 111

Query: 328 SFAQSVQE 335
              ++VQ+
Sbjct: 112 FLPENVQK 119


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 303 SALLYGDTAHKSH 315
           S++ +GD AHK+H
Sbjct: 265 SSIQHGDDAHKTH 277


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.131    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,671
Number of Sequences: 317
Number of extensions: 3301
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 418
length of database: 114,650
effective HSP length: 58
effective length of query: 360
effective length of database: 96,264
effective search space: 34655040
effective search space used: 34655040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)