GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002116-TA|BGIBMGA002116-PA|IPR001841|Zinc finger,
RING-type
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    36   0.014
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    35   0.024
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    34   0.032
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    34   0.043
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    31   0.23 
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    30   0.53 
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    29   0.92 
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    29   1.2  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    29   1.2  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    29   1.2  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    28   2.8  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    28   2.8  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    28   2.8  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    27   3.7  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   4.9  

>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 35.5 bits (78), Expect = 0.014
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 14  CPVCCREFGAPPRSPISLSCGHTLCRHCL 42
           CP+CC E   P ++P+ L+C H  C  CL
Sbjct: 877 CPICCNE---PIQNPLLLNCKHACCGDCL 902


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 34.7 bits (76), Expect = 0.024
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)

Query: 14  CPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRK 48
           C +C +++    RSPI+ +CGH  C  C I  +RK
Sbjct: 254 CLICKKDY----RSPIATTCGHHFCEQCAITRYRK 284


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 34.3 bits (75), Expect = 0.032
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 12  LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIH--LHRKQCPFDQTIIQVEP 61
           L CP+C        + P +  CGHT C  CL++     K CP  +  +  +P
Sbjct: 83  LECPICTEAL----QRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKLYTQP 130


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 33.9 bits (74), Expect = 0.043
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 6   PQWTDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCPF 52
           PQ  D+  C +C          P+ L C H  C HCLI L +++  F
Sbjct: 353 PQLRDF-ECAICSNV----AYKPVRLGCSHVFCLHCLIILQKQKVDF 394


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 489

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 45
          D + CP+C  E     ++     CG+ +CR C  H+
Sbjct: 14 DDMCCPLCMEEIDISDKNFKPCQCGYRVCRFCWHHI 49


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 486

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 4/31 (12%)

Query: 11 YLTCPVCCREFGAPPRSPISLSCGHTLCRHC 41
          Y  CP C       P  P++L CG T+CR C
Sbjct: 16 YFICPGC----NCLPDWPVTLPCGGTVCRKC 42



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 12  LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIH--LHRKQCP 51
           L C +C      P  SP    CGHT C  CL+       QCP
Sbjct: 167 LECQICFGMLYDPVVSP----CGHTFCGPCLMQALTQSPQCP 204


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 29.5 bits (63), Expect = 0.92
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 14  CPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 51
           CP C   F    R      CG  +CR C++ +   Q P
Sbjct: 281 CPECNNSFTLTRRRRHCRLCGRVICRFCVLEISLPQHP 318


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 387

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRK--QCP 51
          L C +C   F    R+P+  SC HT C  C+    R+   CP
Sbjct: 27 LRCLICHEYF----RAPLITSCSHTFCSFCIRDYLREHPMCP 64


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 29  ISLSCGHTLCRHCLIHL 45
           I + CGH LCR CL H+
Sbjct: 758 IIVPCGHFLCRECLTHV 774


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 13  TCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRK-----QCPF 52
           TCPV  +E       P+ +SCGH + +  L  L R      +CP+
Sbjct: 340 TCPVS-KEQATEENPPMMMSCGHVIVKESLRQLSRNGSQRFKCPY 383


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 12/36 (33%), Positives = 13/36 (36%)

Query: 6   PQWTDYLTCPVCCREFGAPPRSPISLSCGHTLCRHC 41
           P WTD   C  C   F    R     +CG   C  C
Sbjct: 168 PDWTDSEVCLRCRTPFTFTNRKHHCRNCGGVFCNQC 203


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 313 KSHMQ-SIIDKLQTPQSFAQSVQELFVALQRTGDPEQLVTMSMHLDKLAN 361
           K H+Q  ++++L   Q+F + +QE  V +QR  + EQ+V   +   ++ +
Sbjct: 627 KEHIQHELLEQLYKSQAFDKLLQESEVTVQRRKECEQMVESLLQASEIVS 676


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 6/134 (4%)

Query: 257 SKRESDSSLMQLKEEFRTYDSLRREHDAQIVQIATESGL----RIAPDQWSALL-YGDTA 311
           S  ++ S L  LKE +  +  +R   DA +V  AT S      R  PD+   L+    ++
Sbjct: 275 SVADTISILRGLKERYEVHHGVRITDDA-LVTAATYSARYITDRFLPDKAIDLVDEACSS 333

Query: 312 HKSHMQSIIDKLQTPQSFAQSVQELFVALQRTGDPEQLVTMSMHLDKLANIDANADAKSP 371
            +   +S  D+L+       ++Q    +L++  D   +        KL ++    D  S 
Sbjct: 334 LRLQQESKPDELRRLDRQIMTIQIELESLRKETDTTSVERREKLESKLTDLKEEQDKLSA 393

Query: 372 TWKQMADVMTSLKE 385
            W++   ++ S+K+
Sbjct: 394 AWEEERKLLDSIKK 407


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 9/73 (12%)

Query: 27  SPISLSCGHTLCRHCLIH-LHRKQ-CPFDQTII---QVEPEELVV--NTALLQLAGYAPP 79
           +P  L CGH L  HCL + L R+Q CP  +  +   Q  P  +    N    Q+A   P 
Sbjct: 322 TPKRLPCGHILHFHCLRNWLERQQTCPICRRSVIGNQSSPTGIPASPNVRATQIATQVP- 380

Query: 80  SQPYQPPCIKALP 92
             P   P   A+P
Sbjct: 381 -NPQNTPTTTAVP 392


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/58 (25%), Positives = 22/58 (37%)

Query: 6   PQWTDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCPFDQTIIQVEPEE 63
           P   +  TC VC     +     I++ C HT    CL       CP  +   +V+  E
Sbjct: 200 PALIELPTCVVCLERMDSSITGLITIVCQHTFHCPCLQKWGNSSCPVCRYTQKVQSSE 257


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.131    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,720,338
Number of Sequences: 5004
Number of extensions: 63173
Number of successful extensions: 211
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 19
length of query: 418
length of database: 2,362,478
effective HSP length: 75
effective length of query: 343
effective length of database: 1,987,178
effective search space: 681602054
effective search space used: 681602054
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)