Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002116-TA|BGIBMGA002116-PA|IPR001841|Zinc finger,
RING-type
(418 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0142 - 17656751-17657554 41 0.002
05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783... 38 0.015
12_02_1243 + 27300978-27301682 34 0.24
05_04_0190 - 18922555-18923349 34 0.24
03_05_0677 + 26663880-26664581 33 0.32
12_01_0961 + 9566730-9566998,9567096-9567187,9567294-9567427,956... 32 0.74
04_04_0310 - 24301274-24301945,24302035-24302365,24302629-243029... 32 0.74
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478... 32 0.74
03_05_0513 - 25073518-25073623,25073719-25073777,25074048-250741... 32 0.98
07_03_1459 + 26681619-26682419,26682600-26682912,26683861-26684672 31 1.7
07_03_1564 + 27749899-27750166,27750431-27750507,27750923-277509... 30 3.0
12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831 30 4.0
12_02_1146 + 26458426-26458680 30 4.0
06_01_0902 - 6934236-6935546 30 4.0
05_05_0173 + 22956927-22958615 30 4.0
05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118 30 4.0
04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522... 30 4.0
01_06_1819 + 40110697-40110721,40110818-40110828,40111228-401115... 30 4.0
01_06_0829 - 32270189-32270863 30 4.0
01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251 30 4.0
10_08_0286 + 16504756-16504953,16505364-16505588,16505739-165057... 29 5.2
09_02_0237 + 6141048-6141962 29 5.2
03_05_0499 + 24940443-24940994 29 5.2
03_05_0380 + 23636675-23636845,23637646-23637678,23637794-23638132 29 5.2
03_01_0351 - 2758646-2759518 29 5.2
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 29 5.2
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 29 6.9
08_02_1334 - 26224546-26225337 29 6.9
04_01_0399 - 5214183-5214206,5215437-5215502,5219537-5219635,521... 29 6.9
03_01_0325 + 2529875-2529922,2530181-2530279,2530958-2531055,253... 29 6.9
02_04_0123 + 19961904-19962096,19962836-19963029,19963334-199634... 29 9.2
02_02_0258 - 8374442-8375083 29 9.2
>03_04_0142 - 17656751-17657554
Length = 267
Score = 40.7 bits (91), Expect = 0.002
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 45
L CP+C F P L CGHT+C++C++ L
Sbjct: 43 LECPICWESFNIVENVPYVLWCGHTMCKNCILGL 76
>05_04_0355 -
20577189-20577275,20578001-20578129,20578252-20578371,
20578505-20578741,20578983-20579258,20579375-20579508,
20580006-20581632
Length = 869
Score = 37.9 bits (84), Expect = 0.015
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 45
CPVC F A +P L CGH+LC C+ L
Sbjct: 17 CPVCLSPFDAASAAPRVLPCGHSLCGPCIASL 48
>12_02_1243 + 27300978-27301682
Length = 234
Score = 33.9 bits (74), Expect = 0.24
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 25 PRSPISLSCGHTLCRHCL-----IHLHRKQCPFDQTIIQVEPEELV 65
P+ PI CGH C CL IH H +CP + + VE ++LV
Sbjct: 32 PQEPIVTLCGHLFCWPCLYKWLHIHSHSPECPVCKAV--VEEDKLV 75
>05_04_0190 - 18922555-18923349
Length = 264
Score = 33.9 bits (74), Expect = 0.24
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 45
C +C + R+P+ L CGH CR CL +
Sbjct: 6 CSLCHVRYDEEERAPLLLHCGHGFCRACLARM 37
>03_05_0677 + 26663880-26664581
Length = 233
Score = 33.5 bits (73), Expect = 0.32
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 25 PRSPISLSCGHTLCRHCL-----IHLHRKQCPFDQTIIQVEPEELV 65
P+ PI CGH C C+ IH H +CP + + VE ++LV
Sbjct: 31 PQEPIVTLCGHLFCWPCIYRWLHIHAHSPECPVCKAV--VEEDKLV 74
>12_01_0961 +
9566730-9566998,9567096-9567187,9567294-9567427,
9567542-9567591,9569026-9569100,9569179-9569734
Length = 391
Score = 32.3 bits (70), Expect = 0.74
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHR---KQCPFDQTIIQVEPEELVVNT 68
L+C +C P +P CGH+ C CL H K+CP + +I VNT
Sbjct: 162 LSCAICLEICFEPSTTP----CGHSFCMKCLKHAAAKCGKRCPKCRQLIS-NSRSCTVNT 216
Query: 69 ALLQLAGYAPPSQ 81
L PS+
Sbjct: 217 VLWNTIQLLFPSE 229
>04_04_0310 -
24301274-24301945,24302035-24302365,24302629-24302954,
24303039-24303413
Length = 567
Score = 32.3 bits (70), Expect = 0.74
Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 332 SVQELFVALQRTGDPEQLVTMSMHLDKLANIDANADAKSPTWKQMADVMTSLKEVVIGLI 391
++ + V + +P ++V +++ + DA SPTW+ + +L++ V G I
Sbjct: 95 AIADRTVEITGPAEPRKMVINALNSGAKVFMADFEDALSPTWENLMRGQVNLRDAVAGTI 154
Query: 392 NYIQQQAAGKDMNQGQK 408
Y + A G++ G +
Sbjct: 155 TY-RDAARGREYRLGDR 170
>02_05_0890 -
32546918-32547088,32547224-32547334,32547705-32547884,
32547960-32548064,32548333-32548431,32548524-32548679,
32548772-32548850,32549213-32549278,32549382-32549536,
32549675-32550034,32550150-32550305,32550779-32550856,
32551471-32551812
Length = 685
Score = 32.3 bits (70), Expect = 0.74
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLI-HL-HRKQCP 51
L CP+C A + +CGH+ C C++ HL H+ CP
Sbjct: 58 LLCPICM----AVIKDAFLTACGHSFCYMCIVTHLSHKSDCP 95
>03_05_0513 -
25073518-25073623,25073719-25073777,25074048-25074185,
25074719-25074982,25075062-25075306,25075874-25076081
Length = 339
Score = 31.9 bits (69), Expect = 0.98
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHC 41
LTCP+C +P +LSCGH C+ C
Sbjct: 233 LTCPICLDTLF----NPYALSCGHLFCKGC 258
>07_03_1459 + 26681619-26682419,26682600-26682912,26683861-26684672
Length = 641
Score = 31.1 bits (67), Expect = 1.7
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHR---KQCP 51
D CP+C APP + SC H C+ C++ + + +CP
Sbjct: 391 DDFECPICL----APPAKTVITSCTHIYCQTCIMKILKSSSSRCP 431
>07_03_1564 +
27749899-27750166,27750431-27750507,27750923-27750950,
27751117-27751261,27751351-27751429,27751515-27751633,
27751732-27752073,27754807-27754896,27755730-27755955,
27756398-27756784,27757176-27757496
Length = 693
Score = 30.3 bits (65), Expect = 3.0
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 51
+ L CPVC P S GHTLC C +H + CP
Sbjct: 441 ELLECPVCLNAMYPPIHQ---CSNGHTLCSGCKPRVHNR-CP 478
>12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831
Length = 512
Score = 29.9 bits (64), Expect = 4.0
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 13 TCPVCCREFGAPPRSPISLSCGHTLCRHCL 42
TC +CC E I + C HT C CL
Sbjct: 197 TCSICCEEKRGAQM--IKVGCAHTFCYSCL 224
>12_02_1146 + 26458426-26458680
Length = 84
Score = 29.9 bits (64), Expect = 4.0
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 13 TCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHR--KQCPFDQTIIQVEPEE 63
+C VC E+G + C H+ RHC+ R CP +T + +P +
Sbjct: 31 SCAVCLGEYGGGDELRVLSWCAHSFHRHCVDPWLRLNPTCPVCRTSLADQPTQ 83
>06_01_0902 - 6934236-6935546
Length = 436
Score = 29.9 bits (64), Expect = 4.0
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCLIH--LHRKQCPFDQTIIQV 59
C VC EF A R + CGH HC+ L CP + ++ V
Sbjct: 190 CAVCLCEFDAEDRLRLLPLCGHAFHLHCIDTWLLSNSTCPLCRGVLFV 237
>05_05_0173 + 22956927-22958615
Length = 562
Score = 29.9 bits (64), Expect = 4.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 28 PISLSCGHTLCRHCL---IHLH--RKQCP 51
P+ SCGH C CL +H+H K+CP
Sbjct: 248 PVVTSCGHLFCWPCLYQWLHVHSTHKECP 276
>05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118
Length = 361
Score = 29.9 bits (64), Expect = 4.0
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 51
+ L CPVC P GHTLC C +H + CP
Sbjct: 96 ELLECPVCTNSMFPPIHQ---CQNGHTLCSTCKARVHNR-CP 133
>04_03_0205 +
12649724-12650191,12651493-12652025,12652114-12652239,
12652625-12652724,12652880-12652899,12653035-12653137,
12653213-12653351,12653448-12653662,12653772-12654320
Length = 750
Score = 29.9 bits (64), Expect = 4.0
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 25 PRSPISLSCGHTLCRHCL---IHLHRKQCPFDQT-IIQVEPEELVVNTALLQ 72
P P++ CGH C C I ++ C + I Q ++L +N AL+Q
Sbjct: 151 PERPVTTPCGHNFCLKCFRRWIENGKRACVICRAPITQKVAQDLRINLALVQ 202
>01_06_1819 +
40110697-40110721,40110818-40110828,40111228-40111572,
40111707-40111782,40113605-40113771,40113818-40114036
Length = 280
Score = 29.9 bits (64), Expect = 4.0
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCL--IHLHRKQCP 51
CPVC E P S CGH C+ C+ +K+CP
Sbjct: 225 CPVCMNELVEPS----STICGHIFCKQCIKASIQAQKKCP 260
>01_06_0829 - 32270189-32270863
Length = 224
Score = 29.9 bits (64), Expect = 4.0
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 26 RSPISLSCGHTLCRHCL-----IHLHRKQCPFDQTIIQVEPEELV 65
+ P+ CGH C CL +H H ++CP + +E E+LV
Sbjct: 35 QDPVVTLCGHLFCWPCLYEWLHVHAHSRECPVCKA--GLEEEKLV 77
>01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251
Length = 347
Score = 29.9 bits (64), Expect = 4.0
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 51
+ L CPVC P GHTLC C +H + CP
Sbjct: 82 ELLECPVCTNSMYPPIHQ---CQNGHTLCSTCKARVHNR-CP 119
>10_08_0286 +
16504756-16504953,16505364-16505588,16505739-16505794,
16505913-16506007,16506696-16506796,16507043-16507234
Length = 288
Score = 29.5 bits (63), Expect = 5.2
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 321 DKLQTPQSFAQSVQELFVALQRTGDPEQLVTMSMHLDKLANIDANADAKSPTWKQ-MADV 379
DK + + F + E +L +T E + D + NAD P W + + V
Sbjct: 103 DKWYSGRIFLNTKVEAGDSLTQTNGREARFWTFVEEDNGNHPVVNADYIPPHWNETICYV 162
Query: 380 MTSLKEVVIGLINYIQQQAAGKDMNQGQKDLRNEPSTN 417
+++++EVV + K + GQ+ R+ P+T+
Sbjct: 163 LSAIREVVKKKCKIVDLNKTSKFRDAGQQGSRSSPATS 200
>09_02_0237 + 6141048-6141962
Length = 304
Score = 29.5 bits (63), Expect = 5.2
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 9 TDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLI-HLHRK-------QCPFDQTIIQVE 60
T +L C +C + A S C H C CL H+ K CP D V+
Sbjct: 121 TSFLFCKICMDDVPASDAHRGSHGCAHAFCAACLAGHIAAKLHSGGGVYCPEDGCASAVD 180
Query: 61 PE 62
PE
Sbjct: 181 PE 182
>03_05_0499 + 24940443-24940994
Length = 183
Score = 29.5 bits (63), Expect = 5.2
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 13 TCPVCCREFGAPPRSPISLSCGHTLCRHCLIH--LHRKQCPFDQTIIQVEPEELVVNTAL 70
TC +CC+E+ + + C H C+ ++ CP + ++ P + N
Sbjct: 91 TCAICCQEYSGADKVRRVVRCSHFFHAGCVDGWLREKRNCPLCRAVLSSLPP--LPNPG- 147
Query: 71 LQLAGYAPPSQPYQPP 86
+ APP P PP
Sbjct: 148 CRRGRAAPPCPPPLPP 163
>03_05_0380 + 23636675-23636845,23637646-23637678,23637794-23638132
Length = 180
Score = 29.5 bits (63), Expect = 5.2
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHC 41
+TC VC E+ P S ++ CGH C C
Sbjct: 145 VTCNVCFEEY--PLGSVSAMDCGHCFCNDC 172
>03_01_0351 - 2758646-2759518
Length = 290
Score = 29.5 bits (63), Expect = 5.2
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCL---IHLHRKQCPFDQTII 57
C VC EF R + SC H C+ +H H CP +T++
Sbjct: 112 CAVCLSEFVRDERLKLLPSCSHAFHIDCIDTWLH-HNVSCPLCRTVV 157
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 29.5 bits (63), Expect = 5.2
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCLI 43
CP+C F +P C H LCR CL+
Sbjct: 750 CPICLEAFEDAVLTP----CAHRLCRECLL 775
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 29.1 bits (62), Expect = 6.9
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHL--HRKQCPFDQTII 57
CPVC R P + + C H C+ CL ++ + CP+D ++
Sbjct: 20 CPVC-RTLICPNEA-LQTQCTHLYCKPCLAYIVATTQACPYDGYLV 63
>08_02_1334 - 26224546-26225337
Length = 263
Score = 29.1 bits (62), Expect = 6.9
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 17 CCREFGAPPRSPISLSCGHTLCRHCLIHL--HRKQCP 51
CC A + + CGHT CR C L R +CP
Sbjct: 214 CCCVCMARAKGAAFIPCGHTFCRTCARELLAGRGRCP 250
>04_01_0399 -
5214183-5214206,5215437-5215502,5219537-5219635,
5219746-5219817,5219918-5220491,5220575-5220687,
5220842-5220941,5221059-5221181,5221268-5221335,
5221461-5221610,5221715-5221858,5222097-5222288,
5222710-5222794,5222892-5223043,5223138-5223296,
5223552-5223605,5223698-5223836,5223955-5224088,
5224200-5225117
Length = 1121
Score = 29.1 bits (62), Expect = 6.9
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCLI 43
CP+C + P+ C H +CR CL+
Sbjct: 896 CPICLE---SASDDPVLTPCAHRMCRECLL 922
>03_01_0325 +
2529875-2529922,2530181-2530279,2530958-2531055,
2531945-2532031,2532652-2532684,2532813-2532890,
2533059-2533183,2533267-2533349,2533436-2533527,
2533611-2533680,2533760-2533829,2533919-2534073
Length = 345
Score = 29.1 bits (62), Expect = 6.9
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQ---CP 51
CPVC + +L CGHT+ CL + Q CP
Sbjct: 212 CPVCFEYLFDSTKDISALHCGHTIHLECLYEMRSHQQFSCP 252
>02_04_0123 +
19961904-19962096,19962836-19963029,19963334-19963465,
19963921-19964038,19964248-19964484,19964576-19964658,
19964777-19965004,19965394-19965470,19965590-19965626,
19965786-19965952,19966156-19966234,19966301-19966378,
19967459-19967575,19967999-19968379,19968453-19968590,
19968680-19968769,19968832-19968840
Length = 785
Score = 28.7 bits (61), Expect = 9.2
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 7/165 (4%)
Query: 214 SALSRKVLVMFVVQRLEPHFPQASKTSIGHVVQLLYRASCFKVSKRESDSSLMQLKEEFR 273
SAL L+ F+ + L + QAS ++ +VQL R F M+ +F
Sbjct: 66 SALFVAQLIRFIFRTLPVYDDQASNNAVDDLVQLALRKPTFLGHFAFMLVETMEQNMKFS 125
Query: 274 TYDSLRREHDAQIVQIATES-GLRIAPDQWSALLYGDTAHKSHMQSIIDKLQTPQSFAQS 332
L H + ++ +R +P + +L D A S S K Q A +
Sbjct: 126 RPPLLSDVHKMYVEKVRNSMFHVRESPQFFKLIL--DFAMTSSSLSSEYKHSDEQMRADA 183
Query: 333 VQELFVALQRTGDPEQLVTMSMHLDKL-ANIDANADAKSPTWKQM 376
+ + + ++ DPE L TM LD + ++ + + S T+K++
Sbjct: 184 LVIVGTLIIKSTDPETLTTM---LDAITTSLGGSKEELSNTYKRI 225
>02_02_0258 - 8374442-8375083
Length = 213
Score = 28.7 bits (61), Expect = 9.2
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 6 PQWTDYLTCPVC-CREFGAPP 25
P D+ TCPVC C F APP
Sbjct: 187 PWLRDHSTCPVCRCDAFAAPP 207
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.131 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,469,515
Number of Sequences: 37544
Number of extensions: 429322
Number of successful extensions: 1252
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1243
Number of HSP's gapped (non-prelim): 34
length of query: 418
length of database: 14,793,348
effective HSP length: 84
effective length of query: 334
effective length of database: 11,639,652
effective search space: 3887643768
effective search space used: 3887643768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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