Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002116-TA|BGIBMGA002116-PA|IPR001841|Zinc finger,
RING-type
(418 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012) 324 1e-88
SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 3e-04
SB_10859| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 5e-04
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018) 39 0.007
SB_49217| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.009
SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073) 39 0.009
SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14) 37 0.026
SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12) 37 0.026
SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08) 37 0.035
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.046
SB_57045| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.081
SB_9017| Best HMM Match : zf-C3HC4 (HMM E-Value=7.9e-12) 36 0.081
SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08) 36 0.081
SB_944| Best HMM Match : zf-B_box (HMM E-Value=6.7e-15) 35 0.11
SB_35560| Best HMM Match : zf-B_box (HMM E-Value=1e-20) 35 0.11
SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.11
SB_46701| Best HMM Match : zf-B_box (HMM E-Value=1.4e-17) 35 0.14
SB_21628| Best HMM Match : zf-B_box (HMM E-Value=1.4e-17) 35 0.14
SB_47995| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09) 35 0.14
SB_43880| Best HMM Match : zf-B_box (HMM E-Value=5.1e-15) 35 0.14
SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14) 35 0.14
SB_28248| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10) 34 0.19
SB_23995| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-05) 34 0.19
SB_22421| Best HMM Match : zf-B_box (HMM E-Value=4e-17) 34 0.19
SB_15975| Best HMM Match : NHL (HMM E-Value=5e-09) 34 0.19
SB_6628| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09) 34 0.25
SB_51226| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09) 34 0.25
SB_41431| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.25
SB_39287| Best HMM Match : NHL (HMM E-Value=1.5e-21) 34 0.25
SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011) 34 0.25
SB_57762| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 33 0.33
SB_18515| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_53640| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10) 33 0.33
SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05) 33 0.33
SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 33 0.33
SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_36856| Best HMM Match : zf-C3HC4 (HMM E-Value=4.4e-05) 33 0.43
SB_26592| Best HMM Match : zf-B_box (HMM E-Value=1.3e-18) 33 0.43
SB_13054| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.43
SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.57
SB_54221| Best HMM Match : zf-B_box (HMM E-Value=2.1e-17) 32 0.75
SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11) 32 0.75
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 32 0.75
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18) 32 0.75
SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19) 32 0.75
SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08) 32 1.00
SB_48027| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10) 32 1.00
SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.00
SB_6802| Best HMM Match : zf-B_box (HMM E-Value=5e-18) 32 1.00
SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12) 31 1.3
SB_58465| Best HMM Match : zf-B_box (HMM E-Value=0.00022) 31 1.7
SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 31 1.7
SB_52478| Best HMM Match : NHL (HMM E-Value=1e-27) 31 1.7
SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 31 1.7
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.3
SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27) 31 2.3
SB_2351| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-07) 31 2.3
SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.3
SB_37345| Best HMM Match : zf-B_box (HMM E-Value=1.3e-23) 30 3.0
SB_12035| Best HMM Match : Pentapeptide (HMM E-Value=1.7) 30 3.0
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 30 3.0
SB_37157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_24395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_14207| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0048) 29 7.0
SB_27781| Best HMM Match : Ank (HMM E-Value=0) 29 9.3
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 29 9.3
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 29 9.3
>SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012)
Length = 450
Score = 324 bits (795), Expect = 1e-88
Identities = 164/303 (54%), Positives = 201/303 (66%), Gaps = 11/303 (3%)
Query: 1 MPIQAPQWTDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCPFDQTIIQVE 60
MPIQ PQWT++LTCP+C EF R PISL+CGHT+C+ CL LH+ QCPFDQ + +
Sbjct: 1 MPIQTPQWTEFLTCPICYHEFEDRQRGPISLACGHTICKACLSQLHKTQCPFDQATVNTD 60
Query: 61 PEELVVNTALLQLAGYAPPSQPYQPPCIKALPESDRQAYDTVIRTMEELAVFLK---CSG 117
++L VNTALLQL Y P I + E+ + Y +R++EELA++LK S
Sbjct: 61 IDKLPVNTALLQLVVLGASVMDYPLPDIPNVRENSSK-YQAAMRSIEELAMYLKPVASSQ 119
Query: 118 NANMSGNGNR-------LSRPMQRKLVTLLQCSITDEEXXXXXXXXXXSLGERTVTELIL 170
+ S NG L+RPMQRKLVTL+ C + +EE SLGERTVTELIL
Sbjct: 120 GTSQSSNGTNGLSSSTTLTRPMQRKLVTLVNCQLAEEEGRTRAMRAARSLGERTVTELIL 179
Query: 171 QHQNPQQLSANLWAAVRARGCQFLGPAMQXXXXXXXXXXXXDGSALSRKVLVMFVVQRLE 230
HQNPQQLSANLWAAVRARGCQFLGPAMQ G LSRKVLV++VVQ+LE
Sbjct: 180 LHQNPQQLSANLWAAVRARGCQFLGPAMQEEALKLILLALDGGDPLSRKVLVLYVVQKLE 239
Query: 231 PHFPQASKTSIGHVVQLLYRASCFKVSKRESDSSLMQLKEEFRTYDSLRREHDAQIVQIA 290
P +PQASKTSIGHVVQLLYRASCFKV+KR+ +SSLMQLKE+ ++ S + I+ +
Sbjct: 240 PVYPQASKTSIGHVVQLLYRASCFKVTKRDDESSLMQLKEQLQSPSSFSQSIQELIISLQ 299
Query: 291 TES 293
S
Sbjct: 300 RSS 302
Score = 53.2 bits (122), Expect = 4e-07
Identities = 21/51 (41%), Positives = 37/51 (72%)
Query: 313 KSHMQSIIDKLQTPQSFAQSVQELFVALQRTGDPEQLVTMSMHLDKLANID 363
+S + + ++LQ+P SF+QS+QEL ++LQR+ DP L + +H ++L+ ID
Sbjct: 271 ESSLMQLKEQLQSPSSFSQSIQELIISLQRSSDPGDLSRLRVHFERLSEID 321
>SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 43.6 bits (98), Expect = 3e-04
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCPFDQTIIQVEPEELVV 66
L CP+C R F + P+ SCGHT C+ C++ ++CP D + + L V
Sbjct: 192 LFCPLCRRVF----KDPVITSCGHTFCQACIMARGVEKCPLDDNKLSIVVANLAV 242
>SB_10859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 42.7 bits (96), Expect = 5e-04
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLI------HLHRKQCPFDQTIIQVEPEE 63
D ++CP+C +F P P C H +CR CL+ L R +CP + I+ V +
Sbjct: 21 DEISCPICYEDFEEPKCLP---KCAHNICRECLLGIIEKAQLERFECPICRAIVAVPKDG 77
Query: 64 L---VVNTALLQLAGYAP 78
+ N+ L++L AP
Sbjct: 78 IDGFPTNSLLVRLVENAP 95
>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
Length = 843
Score = 39.1 bits (87), Expect = 0.007
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 12 LTCPVCCREFGA--PPRSPISLSCGHTLCRHCLIHLHRKQ 49
LTCP+C +G P R P L C HT C C++ + Q
Sbjct: 328 LTCPLCYTAYGTGYPQRIPRILDCSHTFCTECIMKIKELQ 367
>SB_49217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 609
Score = 38.7 bits (86), Expect = 0.009
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL 42
D TC VC EF R P L C HTLC+ C+
Sbjct: 216 DECTCGVCQEEFNEKTRVPKLLHCSHTLCKACV 248
>SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)
Length = 498
Score = 38.7 bits (86), Expect = 0.009
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL 42
D TC VC EF R P L C HTLC+ C+
Sbjct: 319 DECTCGVCQEEFNEKTRVPKLLHCSHTLCKACV 351
>SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 937
Score = 38.3 bits (85), Expect = 0.011
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQ------CPFDQTIIQVE--- 60
D L CP+C EF + P +LSC H LCR CL + ++ CP ++ I +
Sbjct: 17 DELLCPICLDEF----KEPKTLSCMHDLCRKCLEDMAARESSRVIRCPLCRSEIDIPRGG 72
Query: 61 PEELVVNTALLQLAGYAP 78
+ L N L++L +P
Sbjct: 73 VKNLPTNLRLMKLVESSP 90
>SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14)
Length = 594
Score = 37.1 bits (82), Expect = 0.026
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 13/71 (18%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL--HRKQ----CPFDQTIIQV---EPE 62
+TC +C ++ + P L+C HT CRHCL L H K+ CP + I++ E E
Sbjct: 14 VTCCLCLEQY----QDPRVLACLHTYCRHCLESLVEHSKECTVSCPQCREKIEISVDEVE 69
Query: 63 ELVVNTALLQL 73
EL VN L L
Sbjct: 70 ELKVNFMLKDL 80
>SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12)
Length = 654
Score = 37.1 bits (82), Expect = 0.026
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHL--HRKQCP 51
C +CCR F +P++ CGH CR CL HR CP
Sbjct: 379 CTLCCRLF----YNPVTTPCGHVFCRACLNRSLDHRPGCP 414
Score = 33.1 bits (72), Expect = 0.43
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQC 50
L+C CC P +L CGHT+C CL K+C
Sbjct: 99 LSCVRCCGIL----LGPCTLPCGHTVCEKCLSKSQAKKC 133
>SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08)
Length = 599
Score = 36.7 bits (81), Expect = 0.035
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL--HRKQC 50
+TC +C ++ + P L+C HT CRHCL L H K+C
Sbjct: 24 VTCSLCLEQY----QDPRVLACLHTYCRHCLESLVEHSKEC 60
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 36.3 bits (80), Expect = 0.046
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 6 PQWTDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL--HRKQC 50
P+ +TC +C ++ + P L+C HT CRHCL L H K+C
Sbjct: 9 PKDVSDVTCSLCLGQY----QDPRVLACLHTYCRHCLESLVEHSKEC 51
>SB_57045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 35.5 bits (78), Expect = 0.081
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRK-------QCPFDQTIIQVEPEEL 64
CP+C F + P L C HT C CL+ L + CP + ++QV P E+
Sbjct: 16 CPICLERF----KDPRVLPCLHTFCYECLVGLASRYKTEGKWPCPQCKMVVQVSPAEV 69
>SB_9017| Best HMM Match : zf-C3HC4 (HMM E-Value=7.9e-12)
Length = 203
Score = 35.5 bits (78), Expect = 0.081
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRK-------QCPFDQTIIQVEPEEL 64
CP+C F + P L C HT C CL+ L + CP + ++QV P E+
Sbjct: 16 CPICLERF----KDPRVLPCLHTFCYECLVGLASRYKTEGKWPCPQCKMVVQVSPAEV 69
>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
Length = 1631
Score = 35.5 bits (78), Expect = 0.081
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 51
++CPVC F P P SCGH++C CL ++ ++ P
Sbjct: 21 ISCPVCLEVFEEPLVLP---SCGHSVCLQCLQNMTKRNPP 57
>SB_944| Best HMM Match : zf-B_box (HMM E-Value=6.7e-15)
Length = 629
Score = 35.1 bits (77), Expect = 0.11
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL----IHLHRK---QCPFDQTIIQVEPE 62
D +TC +C F P P C H+ CRHCL +H K CP ++ Q+ P
Sbjct: 131 DEVTCSLCIEHFNDPRVLP----CLHSFCRHCLEELAVHSEGKGKLVCPLCKSEFQISPA 186
Query: 63 EL 64
++
Sbjct: 187 DV 188
>SB_35560| Best HMM Match : zf-B_box (HMM E-Value=1e-20)
Length = 470
Score = 35.1 bits (77), Expect = 0.11
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 7 QWTDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL 42
Q D +TC +C F P P C HT CRHCL
Sbjct: 8 QLEDEVTCAICIEHFTDPRLLP----CLHTFCRHCL 39
>SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2342
Score = 35.1 bits (77), Expect = 0.11
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL----IHLHRK---QCPFDQTIIQVEPE 62
D +TC +C F P P C H+ CRHCL +H K CP + Q+ P
Sbjct: 11 DEVTCSLCIEHFNDPRVLP----CFHSFCRHCLEELAVHSEGKGKLVCPLCKAEFQISPA 66
Query: 63 EL 64
++
Sbjct: 67 DV 68
>SB_46701| Best HMM Match : zf-B_box (HMM E-Value=1.4e-17)
Length = 442
Score = 34.7 bits (76), Expect = 0.14
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL--IHLH-----RKQCPFDQTIIQVEPE 62
D +TC +C F P P C H+ CRHCL + +H + CP + Q+ P
Sbjct: 11 DEVTCSICIEHFNDPRVLP----CFHSFCRHCLEELAVHSEGRGKLVCPLCKAEFQISPA 66
Query: 63 EL 64
++
Sbjct: 67 DV 68
>SB_21628| Best HMM Match : zf-B_box (HMM E-Value=1.4e-17)
Length = 291
Score = 34.7 bits (76), Expect = 0.14
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL--IHLH-----RKQCPFDQTIIQVEPE 62
D +TC +C F P P C H+ CRHCL + +H + CP + Q+ P
Sbjct: 11 DEVTCSICIEHFNDPRVLP----CFHSFCRHCLEELAVHSEGRGKLVCPLCKAEFQISPA 66
Query: 63 EL 64
++
Sbjct: 67 DV 68
>SB_47995| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09)
Length = 745
Score = 34.7 bits (76), Expect = 0.14
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL--IHLH-----RKQCPFDQTIIQVEPE 62
D +TC +C F P P C H+ CRHCL + +H + CP + Q+ P
Sbjct: 11 DEVTCSICIEHFNDPRVLP----CFHSFCRHCLEELAVHSEGRGKLVCPLCKAEFQISPA 66
Query: 63 EL 64
++
Sbjct: 67 DV 68
>SB_43880| Best HMM Match : zf-B_box (HMM E-Value=5.1e-15)
Length = 405
Score = 34.7 bits (76), Expect = 0.14
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL--IHLH-----RKQCPFDQTIIQVEPE 62
D +TC +C F P P C H+ CRHCL + +H + CP + Q+ P
Sbjct: 10 DEVTCSICIEHFNDPRVLP----CFHSFCRHCLEELAVHSEGRGKLVCPLCKAEFQISPA 65
Query: 63 EL 64
++
Sbjct: 66 DV 67
>SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)
Length = 856
Score = 34.7 bits (76), Expect = 0.14
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 28 PISLSCGHTLCRHCLIHLHRKQ-----CPFDQTIIQVEPE 62
P+ L CGHT C C+I L R Q CP Q + Q++ E
Sbjct: 405 PLLLECGHTYCDSCIIKLSRLQKTQVACPECQHVTQLKAE 444
>SB_28248| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10)
Length = 119
Score = 34.3 bits (75), Expect = 0.19
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL--IHLH-----RKQCPFDQTIIQVEPE 62
D +TC +C F P P C H+ CRHCL + +H + CP + Q+ P
Sbjct: 11 DEVTCSICIEHFNDPRVLP----CLHSFCRHCLEELAVHSEGRGKLVCPLCKAEFQISPA 66
Query: 63 EL 64
++
Sbjct: 67 DV 68
>SB_23995| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-05)
Length = 96
Score = 34.3 bits (75), Expect = 0.19
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 9/48 (18%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRK-----QCPFDQ 54
L CP+C E+ P R P C HT+C CL + K +CP D+
Sbjct: 20 LVCPICEEEYDDPKRLP----CMHTICLGCLESMVPKNALIMKCPIDE 63
>SB_22421| Best HMM Match : zf-B_box (HMM E-Value=4e-17)
Length = 463
Score = 34.3 bits (75), Expect = 0.19
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL--IHLH-----RKQCPFDQTIIQVEPE 62
D +TC +C F P P C H+ CRHCL + +H + CP + Q+ P
Sbjct: 11 DEVTCSICIEHFNDPRVLP----CLHSFCRHCLEELAVHSEGRGKLVCPLCKAEFQISPA 66
Query: 63 EL 64
++
Sbjct: 67 DV 68
>SB_15975| Best HMM Match : NHL (HMM E-Value=5e-09)
Length = 589
Score = 34.3 bits (75), Expect = 0.19
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL 42
D +CPVC +F P P +C H +CR CL
Sbjct: 19 DECSCPVCLEDFLEPKSLP---NCAHNVCRKCL 48
>SB_6628| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09)
Length = 89
Score = 33.9 bits (74), Expect = 0.25
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 45
D +TC +C F P P C H+ CRHCL L
Sbjct: 11 DEVTCSICIEHFNDPRVLP----CFHSFCRHCLEEL 42
>SB_51226| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09)
Length = 82
Score = 33.9 bits (74), Expect = 0.25
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 45
D +TC +C F P P C H+ CRHCL L
Sbjct: 11 DEVTCSICIEHFNDPRVLP----CFHSFCRHCLEEL 42
>SB_41431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 667
Score = 33.9 bits (74), Expect = 0.25
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL--IHLH-----RKQCPFDQTIIQVEPE 62
D +TC +C F P P C H+ CRHCL + +H + CP + Q+ P
Sbjct: 16 DEVTCSICIEHFDDPRVLP----CLHSFCRHCLEELAVHSEGRGKLVCPLCKAEFQISPA 71
Query: 63 EL 64
++
Sbjct: 72 DV 73
>SB_39287| Best HMM Match : NHL (HMM E-Value=1.5e-21)
Length = 645
Score = 33.9 bits (74), Expect = 0.25
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCL 42
LTC VC +F R P L C HT C+ CL
Sbjct: 20 LTCSVCLEQF----REPKMLPCFHTFCKECL 46
>SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011)
Length = 434
Score = 33.9 bits (74), Expect = 0.25
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 14 CPVCCREFGAPPRSPISL-SCGHTLCRHCLIHLHRKQCPFDQTIIQVEPEELVVNTALLQ 72
CP+C +P++L CGHT C+ C ++CP Q+ + VNT + Q
Sbjct: 235 CPLCQTLMSGSRHTPVALIPCGHTFCQMCTRDC--RKCP----DCQMRVKATAVNTVMQQ 288
Query: 73 LAG 75
+ G
Sbjct: 289 IIG 291
>SB_57762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 33.5 bits (73), Expect = 0.33
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL--IHLH-----RKQCPFDQTIIQVEPE 62
D +TC +C F P P C H+ CRHCL + +H + CP + Q+ P
Sbjct: 11 DEVTCSLCIEHFNDPRVLP----CLHSFCRHCLEELAVHSEGRGKLVCPLCKAEFQISPA 66
Query: 63 EL 64
++
Sbjct: 67 DV 68
>SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 604
Score = 33.5 bits (73), Expect = 0.33
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 6 PQWTDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL--HRKQ----CPFDQTIIQV 59
P+ +TC +C ++ + P L+C HT CRHCL L H ++ CP + I +
Sbjct: 9 PKDVSDVTCSLCLEQY----QDPRVLACLHTYCRHCLESLVEHSQERTVSCPQCREKIVI 64
Query: 60 EPEEL 64
EE+
Sbjct: 65 SVEEV 69
>SB_18515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 33.5 bits (73), Expect = 0.33
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL--IHLH-----RKQCPFDQTIIQVEPE 62
D +TC +C F P P C H+ CRHCL + +H + CP + Q+ P
Sbjct: 11 DEVTCSLCIEHFNDPRVLP----CLHSFCRHCLEELAVHSEGRGKLVCPLCKAEFQISPA 66
Query: 63 EL 64
++
Sbjct: 67 DV 68
>SB_53640| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10)
Length = 62
Score = 33.5 bits (73), Expect = 0.33
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 45
D +TC +C F P P C H+ CRHCL L
Sbjct: 11 DEVTCSICIEHFNDPRVLP----CLHSFCRHCLEEL 42
>SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05)
Length = 576
Score = 33.5 bits (73), Expect = 0.33
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCL 42
CPVC F P P SC H +CR CL
Sbjct: 22 CPVCIEVFEEPKSLP---SCAHNVCRECL 47
>SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 462
Score = 33.5 bits (73), Expect = 0.33
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 6 PQWTDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL--HRKQ----CPFDQTIIQV 59
P+ +TC +C ++ + P L+C HT CRHCL L H ++ CP + I +
Sbjct: 9 PKDVSDVTCSLCLEQY----QDPRVLACLHTYCRHCLESLVEHSQERTVSCPQCREKIVI 64
Query: 60 EPEEL 64
EE+
Sbjct: 65 SVEEV 69
>SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 33.5 bits (73), Expect = 0.33
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 45
D +TC +C F P P C H+ CRHCL L
Sbjct: 10 DEVTCSICIEHFNDPRVLP----CLHSFCRHCLEEL 41
>SB_36856| Best HMM Match : zf-C3HC4 (HMM E-Value=4.4e-05)
Length = 406
Score = 33.1 bits (72), Expect = 0.43
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCL 42
CPVC F P P SC H +CR CL
Sbjct: 22 CPVCIEVFVEPKSLP---SCAHNVCRECL 47
>SB_26592| Best HMM Match : zf-B_box (HMM E-Value=1.3e-18)
Length = 355
Score = 33.1 bits (72), Expect = 0.43
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL--IHLH-----RKQCPFDQTIIQVEPE 62
D + C +C F P P C H+ CRHCL + +H + CP + Q+ P
Sbjct: 11 DEVRCSICIEHFNDPRVLP----CFHSFCRHCLEELAVHSEGRGKLVCPLCKAEFQISPA 66
Query: 63 E---LVVNTALLQL 73
+ L VN +L L
Sbjct: 67 DVPSLKVNFMILPL 80
>SB_13054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 33.1 bits (72), Expect = 0.43
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 8 WTDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL 42
+++ LTCPVC E P SC H +C+ CL
Sbjct: 11 FSEELTCPVCLEELKEP---KCLTSCAHNVCKPCL 42
>SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1161
Score = 32.7 bits (71), Expect = 0.57
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 258 KRESDSSLMQ----LKEEFRTYDSLRREHDAQIVQIATESG----LRIAPDQWSALLYGD 309
K E S MQ L+ E R D RRE AQ+ ++++E+ LR+ DQ+S L +
Sbjct: 609 KEEELESTMQKLDGLRVEIRNADRKRRELQAQVEEMSSEANREKKLRVRSDQYSKQLEEE 668
Query: 310 TAHKSHMQSIIDKLQTPQS 328
+ + I +++T ++
Sbjct: 669 IEYLKELSEKIQEIETKKA 687
>SB_54221| Best HMM Match : zf-B_box (HMM E-Value=2.1e-17)
Length = 455
Score = 32.3 bits (70), Expect = 0.75
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL--IHLH-----RKQCPFDQTIIQVEPE 62
D +TC +C F P P C H+ C HCL + +H + CP + Q+ P
Sbjct: 11 DEVTCSICIEHFNDPRVLP----CFHSFCLHCLEELAVHSEGRGKLVCPLCKAEFQISPA 66
Query: 63 ELV 65
+++
Sbjct: 67 DVL 69
>SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11)
Length = 471
Score = 32.3 bits (70), Expect = 0.75
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 28 PISLSCGHTLCRHCLIHL--HRKQCP 51
P++ CGH+ CR CL HR +CP
Sbjct: 340 PVTSLCGHSFCRDCLYRSLDHRVECP 365
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 32.3 bits (70), Expect = 0.75
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQ--CPFDQTIIQVEP-EELVV 66
D +C VC F +L+C H+ C +CL RK+ CP + +Q +P +V+
Sbjct: 367 DEFSCIVCQELF----IRATTLTCSHSFCEYCLQSWLRKRNTCPICRCAVQSQPVRSIVL 422
Query: 67 NTALLQL 73
+ A+ ++
Sbjct: 423 DNAIAKM 429
>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
Length = 398
Score = 32.3 bits (70), Expect = 0.75
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 13 TCPVCCREFGAPPRSPISLS-CGHTLCRHCL 42
+CP+C EF P +P L CGH C CL
Sbjct: 261 SCPICLEEF--TPETPTRLLVCGHKYCEPCL 289
>SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)
Length = 320
Score = 32.3 bits (70), Expect = 0.75
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCL--IHLHRKQCPFDQTIIQVEPEELVVNTALL 71
CPVC ++ P R P CGH C C+ + L ++C + + P+ L T +
Sbjct: 71 CPVCLQQASYPVRLP----CGHMFCFLCIKGVALRSRKCAICRQ--PISPDYLDKPTLVK 124
Query: 72 QLAGYAPPSQ--PYQPP 86
++G + S P PP
Sbjct: 125 VVSGQSSSSDKAPSDPP 141
>SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08)
Length = 584
Score = 31.9 bits (69), Expect = 1.00
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCL 42
+TC +C ++ + P L+C HT CRHCL
Sbjct: 14 VTCCLCLEQY----QDPRVLACLHTYCRHCL 40
>SB_48027| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10)
Length = 62
Score = 31.9 bits (69), Expect = 1.00
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 45
+TC +C F P P C H+ CRHCL L
Sbjct: 13 VTCSICIEHFNDPRVLP----CLHSFCRHCLEEL 42
>SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1401
Score = 31.9 bits (69), Expect = 1.00
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 6/145 (4%)
Query: 267 QLKEEFRTYDSLRREHDAQIVQIATESGLRIAPDQWSALLYGDTAHKSHMQSIIDKLQTP 326
QL++ YDSL+R++D + Q+ E A D+ A L +S M + + + P
Sbjct: 15 QLRDALSEYDSLKRDYDQAMAQLQEEIA---ALDKMQAELEKKRKTQSAMSAYVKQGLNP 71
Query: 327 QSFAQSVQELFVALQRTGDPEQLVTMSMHLDKL--ANIDANADAKSPTWKQMADVMTSLK 384
+ + S LF R D L S+ + K+ D+ KS ++ ++ L
Sbjct: 72 NTPSPSA-GLFSPRSRACDLYALGNGSLTVTKVRQGERDSKTADKSAQQAELKSIINDLN 130
Query: 385 EVVIGLINYIQQQAAGKDMNQGQKD 409
+ + + + QQ Q +K+
Sbjct: 131 KHLEAMKTQVAQQQEAIGQLQQEKE 155
>SB_6802| Best HMM Match : zf-B_box (HMM E-Value=5e-18)
Length = 316
Score = 31.9 bits (69), Expect = 1.00
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL--IHLH-----RKQCPFDQTIIQVEPE 62
D +TC +C P P C H+ CRHCL + +H + CP + Q+ P
Sbjct: 11 DEVTCSICIEHLNDPRVLP----CLHSFCRHCLEELAVHSEGRGKLVCPLCKAEFQISPA 66
Query: 63 EL 64
++
Sbjct: 67 DV 68
>SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 31.5 bits (68), Expect = 1.3
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 14 CPVCCREFGAPPRSPISLS-CGHTLCRHCLIHLHR 47
CP+C F R PI + CGH C+ CL L R
Sbjct: 26 CPICQLAF----RDPIQIEECGHRFCQSCLQELRR 56
>SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12)
Length = 549
Score = 31.5 bits (68), Expect = 1.3
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 3 IQAPQWTDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQ-----CPFDQTII 57
IQ + + L + CR P L C H+LC+ CL + + Q CP T +
Sbjct: 6 IQGDKKLEDLPEEIWCRYCNGIFEDPRLLPCLHSLCKKCLKDIEQAQEGAIACPVCLTDV 65
Query: 58 QVEPEELVVN 67
+ EEL+ N
Sbjct: 66 ECHLEELLPN 75
>SB_58465| Best HMM Match : zf-B_box (HMM E-Value=0.00022)
Length = 476
Score = 31.1 bits (67), Expect = 1.7
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 12 LTCPVCCREFGAPPRS--PISLSCGHTLCRHCL 42
+ C VC F A P +L+CGHT C CL
Sbjct: 139 MCCSVCYNPFHATESQAIPRNLNCGHTYCTGCL 171
>SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 858
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHR--KQCP 51
D CP+C P CGHT CR C+ + K CP
Sbjct: 674 DSAECPICLETITYPETLQ---GCGHTFCRPCITEASKSSKLCP 714
>SB_52478| Best HMM Match : NHL (HMM E-Value=1e-27)
Length = 1387
Score = 31.1 bits (67), Expect = 1.7
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQ 49
CP+C R F +SP L C HT C C+ + R +
Sbjct: 659 CPICSRPF----KSPKILPCLHTYCSDCVKEIVRSR 690
>SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 911
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHR--KQCP 51
D CP+C P CGHT CR C+ + K CP
Sbjct: 749 DSAECPICLETITYPETLQ---GCGHTFCRPCITEASKSSKLCP 789
>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 30.7 bits (66), Expect = 2.3
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 45
+ L CPVC E+ ++P+ L C H+ C C+ L
Sbjct: 16 EQLMCPVCLGEY----KNPMLLRCYHSFCLRCVQEL 47
>SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27)
Length = 2056
Score = 30.7 bits (66), Expect = 2.3
Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 12/160 (7%)
Query: 220 VLVMFVV-QRLEPHFPQASKTSIGHVVQLLYRASCFKVSKRESDSSL----MQLKEEFRT 274
VL+ F + R P AS +SI + F VS E DS+L + L E+ +
Sbjct: 408 VLIEFAMPSRSSPWQGDASNSSILYDFVRRGERPSFDVSNIELDSNLRNTYLGLVEQAWS 467
Query: 275 YDSLRREHDAQIVQIATESGLRIAPDQWSALLYGDT------AHKSHMQSIIDKLQTPQS 328
D +R I + + +I P + S G T +H+S Q I+D+L +
Sbjct: 468 QDPRKRPSSTDIFETLSNFHSQIGPKKTSNADDGITCIVPLQSHQSLAQEIVDELVSSSP 527
Query: 329 FAQSVQELFVALQRTGDPEQLVTMSMHL-DKLANIDANAD 367
++ L +L+++ V MS+ + D+++N + D
Sbjct: 528 DLETHSLLNESLKKSDGTNACVYMSLKINDEISNRTGDMD 567
>SB_2351| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-07)
Length = 137
Score = 30.7 bits (66), Expect = 2.3
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 51
CPVC F +P + CGH LC+HC + R P
Sbjct: 55 CPVCEDIFVSPVQIK---ECGHRLCQHCYKTIWRSPEP 89
>SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 30.7 bits (66), Expect = 2.3
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIH 44
D C +C FG P+ +CGH C CL+H
Sbjct: 53 DDFKCGIC---FGVL-EDPLVTTCGHVFCSQCLVH 83
>SB_37345| Best HMM Match : zf-B_box (HMM E-Value=1.3e-23)
Length = 581
Score = 30.3 bits (65), Expect = 3.0
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL-----HRKQCP 51
L CP+C E A PR L C HT C+ CL +L H CP
Sbjct: 143 LFCPLC-HEMFANPRL---LPCLHTFCKRCLENLVPPRSHTLSCP 183
>SB_12035| Best HMM Match : Pentapeptide (HMM E-Value=1.7)
Length = 385
Score = 30.3 bits (65), Expect = 3.0
Identities = 30/168 (17%), Positives = 75/168 (44%), Gaps = 9/168 (5%)
Query: 248 LYRASCFKVSKRESDSSLMQLKEEFRTYDSLRREHDAQI-VQIATESGLRIAPDQWSALL 306
L AS V+ RE+ S++ L+E + +LRR ++ + ++ A+ES L + S +
Sbjct: 145 LREASESMVNLREASESMVNLREASKRTVNLRRASESMVNLREASESMLNLREASESVVN 204
Query: 307 YGDTAHKSHMQSIIDKLQTPQSFA--QSVQELFVALQRTGDPEQLVTMSMHLDKLANIDA 364
+ + +S+++ + +S + E V L+ + +V + + + N+
Sbjct: 205 LREAS-----ESMVNLREASESVVNLREASESMVNLREASESVSMVNLRRASESMVNL-R 258
Query: 365 NADAKSPTWKQMADVMTSLKEVVIGLINYIQQQAAGKDMNQGQKDLRN 412
A ++ ++ + SL+E ++N + + + + + + N
Sbjct: 259 EASESMVNLREASESVVSLREASESMVNLREASESVVSLREASESVVN 306
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 30.3 bits (65), Expect = 3.0
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 5 APQWTDYLTCPVCCREFGAPPRSPISLSCGHTLCRHC 41
AP W + C +C +FG R +CG C+ C
Sbjct: 224 APAWAEGDVCHMCRVKFGTFIRQHHCRNCGQVFCKKC 260
>SB_37157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 29.5 bits (63), Expect = 5.3
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 97 QAYDTVIRTMEELAVFLKC--SGNANMSGNGNRLSRPMQR 134
Q Y +R ++E AVFL +G N +GNG R +P+ R
Sbjct: 15 QEYYYHMRDLKEQAVFLGSLNTGKENGNGNGKRRGKPLSR 54
>SB_24395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 29.1 bits (62), Expect = 7.0
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 3 IQAPQWTDYLTCPVCCREFGAPPRSPISL---SCGHTLCRHCLIHLHR 47
IQ + D + CP C G PR + +C +CR C I+ HR
Sbjct: 137 IQENEVKDSIQCPSFC---GMHPREVLKYFCETCDQAICRDCAIYEHR 181
>SB_14207| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0048)
Length = 233
Score = 29.1 bits (62), Expect = 7.0
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 7 QWTDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQ---CPFDQTIIQVEPEE 63
Q + L VCC++ P++ C H +C+ CL + + CP+ +T + + +
Sbjct: 97 QKVEELFACVCCQDLVL---YPVTTKCLHNICKGCLQRSFKAEVFTCPYCRTDLG-KTYK 152
Query: 64 LVVNTAL 70
L VN+AL
Sbjct: 153 LSVNSAL 159
>SB_27781| Best HMM Match : Ank (HMM E-Value=0)
Length = 485
Score = 28.7 bits (61), Expect = 9.3
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 6 PQWTDYLTCPVCCREFGAPPRSPISLSCGHTLCRHC 41
P W+D +C C +F R CG LC C
Sbjct: 421 PPWSDGDSCHECGMKFSIKNRKHHCRHCGRLLCAKC 456
>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 617
Score = 28.7 bits (61), Expect = 9.3
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCL 42
C +C EF P + + L CGH+ +HC+
Sbjct: 560 CVICLDEF-KPGCTLLGLPCGHSFHQHCI 587
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 28.7 bits (61), Expect = 9.3
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL-HRKQCP 51
D CP C E P + +CGH CR C+ +L KQ P
Sbjct: 1947 DQELCPACFCEVDNPYQLA---TCGHVYCRGCVTNLIEAKQFP 1986
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.131 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,080,930
Number of Sequences: 59808
Number of extensions: 476353
Number of successful extensions: 1257
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 1194
Number of HSP's gapped (non-prelim): 110
length of query: 418
length of database: 16,821,457
effective HSP length: 84
effective length of query: 334
effective length of database: 11,797,585
effective search space: 3940393390
effective search space used: 3940393390
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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