GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002116-TA|BGIBMGA002116-PA|IPR001841|Zinc finger,
RING-type
         (418 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   2.9  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    24   8.9  
AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    24   8.9  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 77  APPSQPYQPPCIKALPE 93
           APP++P QPP  +  PE
Sbjct: 101 APPARPSQPPTTRFAPE 117


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 79  PSQPYQPPCIKALPESDRQAYDTVIR 104
           P +PY  PC   + E ++Q  +  +R
Sbjct: 332 PGEPYPHPCRPTVDEKNKQLQEVEMR 357


>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adhesion
            protein protein.
          Length = 1881

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 389  GLINYIQQQAAGKDMNQGQKDLRNEP 414
            GL+ Y +     K + +G  DLR++P
Sbjct: 1542 GLVRYYRHGEVRKTLAEGLDDLRSDP 1567


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.131    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 401,549
Number of Sequences: 2123
Number of extensions: 14841
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 3
length of query: 418
length of database: 516,269
effective HSP length: 66
effective length of query: 352
effective length of database: 376,151
effective search space: 132405152
effective search space used: 132405152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)