Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002116-TA|BGIBMGA002116-PA|IPR001841|Zinc finger,
RING-type
(418 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74370.1 68414.m08616 zinc finger (C3HC4-type RING finger) fa... 44 1e-04
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 43 4e-04
At3g29270.2 68416.m03675 expressed protein 41 0.002
At3g29270.1 68416.m03674 expressed protein 41 0.002
At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) fa... 40 0.002
At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger) fa... 40 0.002
At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger) fa... 40 0.002
At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger) fa... 40 0.002
At1g69330.1 68414.m07954 zinc finger (C3HC4-type RING finger) fa... 40 0.003
At5g13530.1 68418.m01562 protein kinase family protein / ankyrin... 34 0.15
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 33 0.47
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 32 0.62
At2g31510.1 68415.m03850 IBR domain-containing protein / ARIADNE... 32 0.62
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 32 0.82
At2g22690.1 68415.m02689 expressed protein 32 0.82
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 31 1.1
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 31 1.1
At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica... 31 1.1
At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putat... 31 1.1
At4g37880.1 68417.m05357 expressed protein 31 1.4
At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa... 31 1.4
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 31 1.4
At1g32250.1 68414.m03967 calmodulin, putative similar to calmodu... 31 1.4
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 31 1.9
At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa... 31 1.9
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat... 31 1.9
At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger) fa... 31 1.9
At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger) fa... 31 1.9
At4g27880.1 68417.m04002 seven in absentia (SINA) family protein... 30 2.5
At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containi... 30 2.5
At1g80270.2 68414.m09398 DNA-binding protein, putative similar t... 30 2.5
At1g80270.1 68414.m09397 DNA-binding protein, putative similar t... 30 2.5
At4g15975.1 68417.m02425 zinc finger (C3HC4-type RING finger) fa... 30 3.3
At3g10180.1 68416.m01219 kinesin motor protein-related similar t... 30 3.3
At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger) fa... 30 3.3
At5g48655.3 68418.m06019 zinc finger (C3HC4-type RING finger) fa... 29 4.4
At5g48655.2 68418.m06018 zinc finger (C3HC4-type RING finger) fa... 29 4.4
At5g48655.1 68418.m06017 zinc finger (C3HC4-type RING finger) fa... 29 4.4
At5g37930.1 68418.m04569 seven in absentia (SINA) family protein... 29 4.4
At5g37910.1 68418.m04567 seven in absentia (SINA) family protein... 29 4.4
At5g27420.1 68418.m03273 zinc finger (C3HC4-type RING finger) fa... 29 4.4
At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger) fa... 29 4.4
At3g61790.1 68416.m06933 seven in absentia (SINA) family protein... 29 4.4
At1g66630.1 68414.m07571 seven in absentia (SINA) family protein... 29 4.4
At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger) fa... 29 5.8
At3g30810.1 68416.m03942 hypothetical protein 29 5.8
At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger) fa... 29 5.8
At3g59730.1 68416.m06664 receptor lectin kinase, putative simila... 29 7.6
At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing ... 29 7.6
At2g44410.1 68415.m05523 expressed protein 29 7.6
>At1g74370.1 68414.m08616 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 261
Score = 44.4 bits (100), Expect = 1e-04
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHR 47
L CP+C F P L CGHT+C++CL+ L R
Sbjct: 44 LECPICWESFNVVENVPYVLWCGHTICKYCLLGLQR 79
>At1g21650.1 68414.m02710 preprotein translocase secA family
protein contains Pfam profiles: PF01043 SecA protein,
amino terminal region, PF00400 WD domain, G-beta
repeat, PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 42.7 bits (96), Expect = 4e-04
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRK-----QCPFDQTIIQVEPE 62
CPVC + + P L+CGHT C CL +L +K +CP +++ P+
Sbjct: 6 CPVCLQSYDGESTVPRVLACGHTACEECLTNLPKKFPDTIRCPACTVLVKFPPQ 59
>At3g29270.2 68416.m03675 expressed protein
Length = 263
Score = 40.7 bits (91), Expect = 0.002
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 45
L CP+C F P L CGHT+C++C++ L
Sbjct: 52 LECPICWESFNIVENVPYVLWCGHTMCKNCILGL 85
>At3g29270.1 68416.m03674 expressed protein
Length = 263
Score = 40.7 bits (91), Expect = 0.002
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 45
L CP+C F P L CGHT+C++C++ L
Sbjct: 52 LECPICWESFNIVENVPYVLWCGHTMCKNCILGL 85
>At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 491
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 9 TDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIH-LHR-KQCPFDQTIIQVEPEELVV 66
+D C VC + P +P CGHT CR CL + R +CP +T+I + P V
Sbjct: 191 SDDFDCTVCLKLLYEPATTP----CGHTFCRSCLFQSMDRGNKCPLCRTVIFMTPRTCAV 246
Query: 67 NTAL 70
+ L
Sbjct: 247 SVTL 250
>At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 9 TDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIH-LHR-KQCPFDQTIIQVEPEELVV 66
+D C VC + P +P CGHT CR CL + R +CP +T+I + P V
Sbjct: 191 SDDFDCTVCLKLLYEPATTP----CGHTFCRSCLFQSMDRGNKCPLCRTVIFMTPRTCAV 246
Query: 67 NTAL 70
+ L
Sbjct: 247 SVTL 250
>At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 9 TDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIH-LHR-KQCPFDQTIIQVEPEELVV 66
+D C VC + P +P CGHT CR CL + R +CP +T+I + P V
Sbjct: 191 SDDFDCTVCLKLLYEPATTP----CGHTFCRSCLFQSMDRGNKCPLCRTVIFMTPRTCAV 246
Query: 67 NTAL 70
+ L
Sbjct: 247 SVTL 250
>At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 9 TDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIH-LHR-KQCPFDQTIIQVEPEELVV 66
+D C VC + P +P CGHT CR CL + R +CP +T+I + P V
Sbjct: 191 SDDFDCTVCLKLLYEPATTP----CGHTFCRSCLFQSMDRGNKCPLCRTVIFMTPRTCAV 246
Query: 67 NTAL 70
+ L
Sbjct: 247 SVTL 250
>At1g69330.1 68414.m07954 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 270
Score = 39.9 bits (89), Expect = 0.003
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 45
L CP+C F P L CGHTLC++C+ L
Sbjct: 43 LECPICWESFNIVENVPYVLWCGHTLCQNCVFGL 76
>At5g13530.1 68418.m01562 protein kinase family protein / ankyrin
repeat family protein contains similarity to
ankyrin-related gene UNC-44 gi|790608|gb|AAA85854;
contains Pfam domains PF00023: Ankyrin repeat and
PF00069: Protein kinase domain
Length = 834
Score = 34.3 bits (75), Expect = 0.15
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCL 42
C VC + R P+ L CGH C+ CL
Sbjct: 10 CSVCHTRYNEDERVPLLLQCGHGFCKDCL 38
>At2g32950.1 68415.m04039 COP1 regulatory protein
photomorphogenesis repressor; identical to COP1
regulatory protein/FUSCA protein FUS1 GI:402685
SP:P43254
Length = 675
Score = 32.7 bits (71), Expect = 0.47
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 3 IQAPQWTDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLI-HLHRK-QCP 51
I AP L CP+C + + +CGH+ C C+I HL K CP
Sbjct: 41 IGAPDLDKDLLCPICMQII----KDAFLTACGHSFCYMCIITHLRNKSDCP 87
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 32.3 bits (70), Expect = 0.62
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQ----CPFDQTIIQ 58
CP+C P +P C H +CR CL+ R CP +TI++
Sbjct: 1040 CPICLESADDPVLTP----CAHRMCRECLLTSWRSPSCGLCPICRTILK 1084
>At2g31510.1 68415.m03850 IBR domain-containing protein /
ARIADNE-like protein ARI7 (ARI7) identical to
ARIADNE-like protein ARI7 [Arabidopsis thaliana]
GI:29125028; contains similarity to Swiss-Prot:Q94981
ariadne-1 protein (Ari-1) [Drosophila melanogaster];
contains Pfam profile PF01485: IBR domain
Length = 562
Score = 32.3 bits (70), Expect = 0.62
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHC 41
LTC +C + PP S+SCGH C C
Sbjct: 135 LTCGICFDSY--PPEKIASVSCGHPFCTTC 162
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 31.9 bits (69), Expect = 0.82
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 18 CREFGAPPRSPISLSCGHTLCRHCLI 43
C E PP P+ CGH C C++
Sbjct: 751 CYECNEPPEKPVVTLCGHIFCYECVL 776
>At2g22690.1 68415.m02689 expressed protein
Length = 381
Score = 31.9 bits (69), Expect = 0.82
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRK-----QCPFDQTII 57
CPV +E + P+ L+CGH LC+ + + R +CP+ T I
Sbjct: 324 CPVS-KEHSSEDNPPMRLACGHVLCKQSINRMSRNGSRSFKCPYCPTDI 371
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 31.5 bits (68), Expect = 1.1
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 33 CGHTLCRHCLIHLHRKQCPF 52
CGH LCRHC + R CPF
Sbjct: 4675 CGHVLCRHCSTSVSR--CPF 4692
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 31.5 bits (68), Expect = 1.1
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLI 43
L CP+C + S +SLSC H C C++
Sbjct: 349 LKCPICLSLYN----SAVSLSCNHVFCNACIV 376
>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P31244 DNA
repair protein RAD16 {Saccharomyces cerevisiae};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 638
Score = 31.5 bits (68), Expect = 1.1
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 13 TCPVCCREFGAPPRSPISLSCGHTLCRHCL 42
TC VC PP+ P+ CGH C C+
Sbjct: 394 TCSVC----SDPPKDPVVTLCGHVFCYECV 419
>At1g66620.1 68414.m07570 seven in absentia (SINA) protein,
putative similar to SIAH1 protein [Brassica napus var.
napus] GI:7657876; contains Pfam profile PF03145: Seven
in absentia protein family
Length = 313
Score = 31.5 bits (68), Expect = 1.1
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 51
D L CP+CC +P GH C C L R +CP
Sbjct: 40 DLLDCPICCHALTSP---IFQCDNGHIACSSCCTKL-RNKCP 77
>At4g37880.1 68417.m05357 expressed protein
Length = 388
Score = 31.1 bits (67), Expect = 1.4
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 7 QWTDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRK------QCPFDQTIIQV 59
Q+ CPV +E + P+ +SCGH LC+ + + + +CP+ T + +
Sbjct: 323 QFHSVFVCPVS-KEQSSDDNPPMMMSCGHVLCKQTINKMSKNGSKSSFKCPYCPTDVDI 380
>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 214
Score = 31.1 bits (67), Expect = 1.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 16 VCCREFGAPPRSPISLSCGHTLCRHCL--IHLHRKQCPF-DQTIIQV 59
VCC G + + CGHT CR C + L+R CP ++ II++
Sbjct: 165 VCCVCMGRK-KGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPIIEI 210
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 31.1 bits (67), Expect = 1.4
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 15 PVCCREFGAPPRSPISLSCGHTLCRHCL 42
P+CC PP P+ CGH C C+
Sbjct: 677 PICC-VCHDPPEDPVVTLCGHIFCYQCV 703
>At1g32250.1 68414.m03967 calmodulin, putative similar to calmodulin
GB:M59770 GI:160127 from (Plasmodium falciparum);
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 166
Score = 31.1 bits (67), Expect = 1.4
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 255 KVSKRESDSSLMQLKEEFRTYDSLRREHDAQIVQIATES-----GLRIAPDQWSALL 306
KVSK+ + + +L+E FR++D R D + Q+ S G++ +PDQ+ L+
Sbjct: 4 KVSKKLDEEQINELREIFRSFD---RNKDGSLTQLELGSLLRALGVKPSPDQFETLI 57
>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 862
Score = 30.7 bits (66), Expect = 1.9
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 51
CP+C +PP + I C H CR C++ ++ P
Sbjct: 616 CPICI----SPPTNIIITRCAHIFCRACILQTLQRSKP 649
>At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 227
Score = 30.7 bits (66), Expect = 1.9
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 26 RSPISLSCGHTLCRHCLI-----HLHRKQCPFDQTIIQ 58
+ PI CGH C CL H H ++CP + ++Q
Sbjct: 36 QDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 73
>At1g66610.1 68414.m07569 seven in absentia (SINA) protein,
putative similar to SIAH1 protein [Brassica napus var.
napus] GI:7657876; contains Pfam profile PF03145: Seven
in absentia protein family
Length = 366
Score = 30.7 bits (66), Expect = 1.9
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCPF 52
D L CP+CC P GH C C ++ K CP+
Sbjct: 52 DLLDCPICCNALTIP---IFQCDKGHIACSSCCTNVSNK-CPY 90
>At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 30.7 bits (66), Expect = 1.9
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 PVCCREFGAPPRSPISLSCGHTLCRHCL--IHLHRKQCP 51
P+CC G + + CGHT CR C I ++R CP
Sbjct: 154 PLCCVCMGRE-KGAAFIPCGHTYCRVCSREIWMNRGTCP 191
>At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 30.7 bits (66), Expect = 1.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 26 RSPISLSCGHTLCRHCL---IHLH--RKQCPFDQTIIQ 58
+ PI CGH C CL +HLH K CP + +I+
Sbjct: 31 QDPIVTLCGHLFCWPCLYKWLHLHSQSKDCPVCKAVIE 68
>At4g27880.1 68417.m04002 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia
protein family
Length = 327
Score = 30.3 bits (65), Expect = 2.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 51
+ L CPVC P + GHTLC C + +H + CP
Sbjct: 60 ELLECPVCTYSMYPPIHQCHN---GHTLCSTCKVRVHNR-CP 97
>At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 978
Score = 30.3 bits (65), Expect = 2.5
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 14/130 (10%)
Query: 242 GHVVQLLYRASCFKVSKRESDSSLMQLKEEFRTYDSLRREHDAQIVQIAT-ESGLRIAPD 300
G+V Y A +V E S + L Y S R +D V+++ E GLR P
Sbjct: 653 GNVEMAAYAAEKIQVLAPERTGSYVLLSN---VYASAGRWNDMAKVRLSMKEKGLRKPPG 709
Query: 301 QWSALLYGDT-----AHKSH-----MQSIIDKLQTPQSFAQSVQELFVALQRTGDPEQLV 350
S + G T +SH +++++D++ S V +L L + E++
Sbjct: 710 TSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIF 769
Query: 351 TMSMHLDKLA 360
+S H +KLA
Sbjct: 770 MLSRHSEKLA 779
>At1g80270.2 68414.m09398 DNA-binding protein, putative similar to
DNA-binding protein [Triticum aestivum] GI:6958202;
contains Pfam profile: PF01535 PPR repeat
Length = 596
Score = 30.3 bits (65), Expect = 2.5
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 255 KVSKRESDSSLMQLKEEFRTYDSLRREHDAQIVQIATESGLRIAPDQWSAL--LYGDTAH 312
K+ +R S S+ L + + L + D +V+ ESG RI W AL LY +
Sbjct: 428 KMDRRASSSTYSVLLRVYVDHKMLSKGKD--LVKRMAESGCRIEATTWDALIKLYVEAGE 485
Query: 313 KSHMQSIIDKLQTPQSFAQSVQELFV 338
S++DK + QS + + F+
Sbjct: 486 VEKADSLLDK-ASKQSHTKLMMNSFM 510
>At1g80270.1 68414.m09397 DNA-binding protein, putative similar to
DNA-binding protein [Triticum aestivum] GI:6958202;
contains Pfam profile: PF01535 PPR repeat
Length = 596
Score = 30.3 bits (65), Expect = 2.5
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 255 KVSKRESDSSLMQLKEEFRTYDSLRREHDAQIVQIATESGLRIAPDQWSAL--LYGDTAH 312
K+ +R S S+ L + + L + D +V+ ESG RI W AL LY +
Sbjct: 428 KMDRRASSSTYSVLLRVYVDHKMLSKGKD--LVKRMAESGCRIEATTWDALIKLYVEAGE 485
Query: 313 KSHMQSIIDKLQTPQSFAQSVQELFV 338
S++DK + QS + + F+
Sbjct: 486 VEKADSLLDK-ASKQSHTKLMMNSFM 510
>At4g15975.1 68417.m02425 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 235
Score = 29.9 bits (64), Expect = 3.3
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCL---IHLHRKQCPFDQTIIQVEP 61
+ C VC EF + +C HT HC+ H H CP ++ Q+EP
Sbjct: 74 MECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSH-SSCPLCRS--QIEP 123
>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
centromere protein E GB:4502781 [Homo sapiens]
Length = 1348
Score = 29.9 bits (64), Expect = 3.3
Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 315 HMQSIIDKLQTPQSFAQS-VQELFVALQRTGDPEQLVTMSMHLDKLANIDANADAKSPTW 373
H+Q+ + +L+T + S Q+L +++ + ++ ++MHL AN + + W
Sbjct: 961 HLQNDVTELKTRLEVSSSDQQQLETNVKQLLEEKE--ELAMHL---ANSLLEMEEEKAIW 1015
Query: 374 KQMADVMTSLKEVVIGLINYIQQQAAGKDMNQGQKDLRN 412
+T E I L IQ ++ K+M++ +K+L +
Sbjct: 1016 SSKEKALTEAVEEKIRLYKNIQIESLSKEMSEEKKELES 1054
>At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger)
family protein contains Pfam PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 182
Score = 29.9 bits (64), Expect = 3.3
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 8/41 (19%)
Query: 2 PIQAPQWTDYLTCPVCCREFGAPPRSPISLSCGHTLCRHCL 42
P++ P+++ CP+C P +S CGH C+ C+
Sbjct: 119 PVEEPKFS----CPICL----CPFTQEVSTKCGHIFCKKCI 151
>At5g48655.3 68418.m06019 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 13 TCPVCCREFGAPPRSPISLSCGHTLCRHCL-IHLHRK-QCP 51
TCP+C P +S CGH C+ C+ + + R+ +CP
Sbjct: 147 TCPICM----CPFTEEMSTKCGHIFCKGCIKMAISRQGKCP 183
>At5g48655.2 68418.m06018 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 13 TCPVCCREFGAPPRSPISLSCGHTLCRHCL-IHLHRK-QCP 51
TCP+C P +S CGH C+ C+ + + R+ +CP
Sbjct: 147 TCPICM----CPFTEEMSTKCGHIFCKGCIKMAISRQGKCP 183
>At5g48655.1 68418.m06017 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 13 TCPVCCREFGAPPRSPISLSCGHTLCRHCL-IHLHRK-QCP 51
TCP+C P +S CGH C+ C+ + + R+ +CP
Sbjct: 147 TCPICM----CPFTEEMSTKCGHIFCKGCIKMAISRQGKCP 183
>At5g37930.1 68418.m04569 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 349
Score = 29.5 bits (63), Expect = 4.4
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 10 DYLTCPVCCREFGAPPRSPI-SLSCGHTLCRHCLIHLHRKQCP 51
D L CP+CC P + PI GH C C + R +CP
Sbjct: 109 DVLDCPICCE----PLKIPIFQCDNGHLACTLCCTKV-RNRCP 146
>At5g37910.1 68418.m04567 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 276
Score = 29.5 bits (63), Expect = 4.4
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 51
D L CP+CC +P GH C C L K CP
Sbjct: 34 DILDCPICCEALTSP---IFQCDNGHLACGSCCPKLSNK-CP 71
>At5g27420.1 68418.m03273 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana]
gi|4928403|gb|AAD33584.1|AF132016_1[4928403]; contains
Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 368
Score = 29.5 bits (63), Expect = 4.4
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCL---IHLHRKQCPFDQT-IIQVEPE-ELVV 66
L C +C EF + C H HC+ + H CP +T + + PE E+VV
Sbjct: 122 LECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGH-VTCPVCRTNLAEQTPEPEVVV 180
Query: 67 NTALLQLAGYAPPSQPYQPPCIKALPESDRQAYDTVI 103
T L A P + P +K P S + V+
Sbjct: 181 ETDLEAQQQSAVPVPVVELPRVK-FPRSHTTGHSVVL 216
>At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 532
Score = 29.5 bits (63), Expect = 4.4
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCL 42
C +CC + +SL C H C HC+
Sbjct: 207 CSICCED--RQSEMMLSLKCTHKFCSHCM 233
>At3g61790.1 68416.m06933 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia
protein family
Length = 326
Score = 29.5 bits (63), Expect = 4.4
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCP 51
+ L CPVC P + GHTLC C +H + CP
Sbjct: 59 ELLECPVCTNSMYPPIHQCHN---GHTLCSTCKARVHNR-CP 96
>At1g66630.1 68414.m07571 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 303
Score = 29.5 bits (63), Expect = 4.4
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 10 DYLTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLHRKQCPF 52
D L CP+C + GAP GH C C + K CP+
Sbjct: 45 DLLDCPICYHKLGAP---IYQCDNGHIACSSCCKKVKYK-CPY 83
>At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 262
Score = 29.1 bits (62), Expect = 5.8
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 14 CPVCCREFGAPPRSPISLSCGHTLCRHCLI 43
CP+C F P R +CGH C +C++
Sbjct: 74 CPICFGSFTVPCRG----NCGHWYCGNCIL 99
>At3g30810.1 68416.m03942 hypothetical protein
Length = 791
Score = 29.1 bits (62), Expect = 5.8
Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Query: 180 ANLWAAVRARGCQFLGPAMQXXXXXXXXXXXXDGSAL-SRKVLVMFVVQRLEPHFPQASK 238
ANL ++ R CQ G +G A+ + LV QRL P AS+
Sbjct: 421 ANLLRHIKGRNCQVPGVKNMAKAASYADMMAKEGQAIAATNKLVALYEQRLS-QVPSASE 479
Query: 239 TSIGHVVQLLYRASCFKVSKRE--SDSSLMQLKEEFRTYDSLRREHDAQIVQIATESG 294
G + +S +RE + + +LK E T L + + A+I + E G
Sbjct: 480 LEEGKTLIRELTSSVKAGQEREVSFQAEIERLKIELSTSKDLEKGYAAKIGLMEMEIG 537
>At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 137
Score = 29.1 bits (62), Expect = 5.8
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 26 RSPISLSCGHTLCRHCL---IHLHRK--QCPFDQTIIQ 58
R PI CGH C CL +H H K CP + +++
Sbjct: 27 REPIVTLCGHLFCWPCLYKWLHYHSKSNHCPVCKALVK 64
>At3g59730.1 68416.m06664 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains pfam domains PF00139:
Legume lectins beta domain and PF00069: Protein kinase
domain
Length = 523
Score = 28.7 bits (61), Expect = 7.6
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 12 LTCPVCCREFGAPPRSPISLSCGHTLCRHCLIHLH 46
L +C EF PPR P+ LS L ++ L H+H
Sbjct: 193 LDVTLCPAEFLVPPRKPL-LSLNRDLSQYVLKHMH 226
>At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing
protein similar to SP|P34909 General negative regulator
of transcription subunit 4 {Saccharomyces cerevisiae};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 989
Score = 28.7 bits (61), Expect = 7.6
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 13 TCPVCCREFGAPPRSPISLSCGHTLCRHCLIHL 45
TCP+C E + CG+ +C C H+
Sbjct: 8 TCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHI 40
>At2g44410.1 68415.m05523 expressed protein
Length = 413
Score = 28.7 bits (61), Expect = 7.6
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
Query: 11 YLTCPVCCREFGAPPRSPISLSCGHTLCRHC-----LIHLHRKQCP 51
+ C +C + PI CGH C C LI+L+ K+CP
Sbjct: 122 FFDCNICLEK----AEDPILTCCGHLFCWGCFYQLPLIYLNIKECP 163
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.131 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,112,222
Number of Sequences: 28952
Number of extensions: 338948
Number of successful extensions: 1122
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1109
Number of HSP's gapped (non-prelim): 53
length of query: 418
length of database: 12,070,560
effective HSP length: 83
effective length of query: 335
effective length of database: 9,667,544
effective search space: 3238627240
effective search space used: 3238627240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -