GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002115-TA|BGIBMGA002115-PA|IPR008853|TMEM9
         (222 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe...    26   3.8  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   3.8  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    26   5.1  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.9  

>SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 198 HQQDKWKRQVREQRRNIYDRHTMLN 222
           H+ D+WKR+++E  R      T+ N
Sbjct: 198 HEDDEWKRRIQEPHRACITSVTLTN 222


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 167 EHTNEDDDNPIPGTSQTMGATPRGNVLNRVTHQQDK 202
           E +N+ DD P   TS +    P  N +NR TH  +K
Sbjct: 904 ESSNDIDDRP-SSTSPSTLKNPSINSINRQTHDVEK 938


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/53 (24%), Positives = 22/53 (41%)

Query: 170 NEDDDNPIPGTSQTMGATPRGNVLNRVTHQQDKWKRQVREQRRNIYDRHTMLN 222
           N DDD P P  ++ +G       + +V+   +  K      + N  D+   LN
Sbjct: 531 NSDDDKPSPAAAEDIGTNGAIEEIPQVSEVLEPEKAHTTNLQLNALDKEEDLN 583


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 36  IYTLPMDDKDVIYPFGYKG--TFENKRCKCVC 65
           ++TLP DD DV   FG +    F   R  C C
Sbjct: 137 LFTLPSDDLDVYEFFGGENLTLFNQVRVDCQC 168


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.139    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,042,372
Number of Sequences: 5004
Number of extensions: 42094
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 4
length of query: 222
length of database: 2,362,478
effective HSP length: 70
effective length of query: 152
effective length of database: 2,012,198
effective search space: 305854096
effective search space used: 305854096
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)