GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002115-TA|BGIBMGA002115-PA|IPR008853|TMEM9
         (222 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0210 - 13509814-13510965                                         28   7.0  
12_02_1179 - 26720533-26721021,26721329-26722597                       27   9.2  
12_02_0272 - 16634765-16635004,16635412-16635457,16636107-166380...    27   9.2  
03_02_0650 + 10174905-10175000,10175321-10175376,10175467-101755...    27   9.2  

>09_03_0210 - 13509814-13510965
          Length = 383

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 13  CEHAQDRSVADKPAFFSIHSLKPIYTLPMDDKDVI-YPFGYKGT 55
           C+HA+   + DKP  F        Y +  D  +++   FG +GT
Sbjct: 212 CKHAEGFKILDKPMSFGFEQYHDSYLVESDQGELMAVLFGRRGT 255


>12_02_1179 - 26720533-26721021,26721329-26722597
          Length = 585

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 153 LDPLINKRAMASYQEHTNEDDDNPIP 178
           +DPL NK A +  +++  E D N +P
Sbjct: 1   MDPLTNKAAFSGLRQYVKELDSNTLP 26


>12_02_0272 -
           16634765-16635004,16635412-16635457,16636107-16638098,
           16639478-16640286
          Length = 1028

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 155 PLINKRAMASYQEHTNEDDDNPIPGTSQTMGATPRGNVLNRVTHQQD---KWKRQVREQR 211
           PLI    +   +E       + +P     +   PR  ++NRV   ++   +WK +VRE  
Sbjct: 900 PLIGIEHLPRLEEVQVTSHSSKVPAYRDAVQRHPRSTLVNRVISSKNSTKEWKDKVRELA 959

Query: 212 RNIYD 216
            +I D
Sbjct: 960 YDIED 964


>03_02_0650 +
           10174905-10175000,10175321-10175376,10175467-10175540,
           10176215-10176753,10176845-10177186,10177520-10177879,
           10177982-10178193,10178881-10179169,10179469-10180152
          Length = 883

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 36  IYTLPMDDKDVIYPFGYKGTFENKRCKCVCPSPAAVFNNTADTGRSPFIDNVPPN 90
           IY+    +K  ++   Y G +++K  K  C      F+   D  +  F  N+ PN
Sbjct: 283 IYSYTTTEKGSLHE--YSGDYDSKSLKTFCQEHLPRFSKRVDINQFSFPSNIIPN 335


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.139    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,686,324
Number of Sequences: 37544
Number of extensions: 274795
Number of successful extensions: 540
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 4
length of query: 222
length of database: 14,793,348
effective HSP length: 79
effective length of query: 143
effective length of database: 11,827,372
effective search space: 1691314196
effective search space used: 1691314196
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)