GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002115-TA|BGIBMGA002115-PA|IPR008853|TMEM9
         (222 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57684| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_37630| Best HMM Match : rve (HMM E-Value=4e-24)                     28   5.4  
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_28237| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_21078| Best HMM Match : P120R (HMM E-Value=0.44)                    27   9.4  

>SB_57684| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 179 GTSQTMGATP-RGNVLNRVTHQQDKWKRQVREQ 210
           GTS+++G T  RG +L R   +Q  W++  R +
Sbjct: 222 GTSRSLGLTKTRGKILERYDKKQSHWRQSRRRE 254


>SB_37630| Best HMM Match : rve (HMM E-Value=4e-24)
          Length = 442

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 5/38 (13%)

Query: 55 TFENKRCKCVCPSPAAVFNNTADTGRSPFIDNVPPNKC 92
          ++ + RCKC CP      NNT    ++ F+  V P +C
Sbjct: 38 SYSDVRCKCTCPKELGK-NNT----KNVFVATVEPEQC 70


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 77   DTGRSPFIDNVPPNKCNCEGLVLPRIGD 104
            D   S  IDN  PN CN  G+   +IG+
Sbjct: 2122 DHNCSTIIDNCDPNPCNHSGICTNKIGN 2149


>SB_28237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 148 GFLICLDPLINKR-AMASYQEHTNEDDDNPIP 178
           G  ICLD     R  + +Y EH ++DDD   P
Sbjct: 8   GIRICLDKSFRPRNCIQTYPEHCSDDDDLGYP 39


>SB_21078| Best HMM Match : P120R (HMM E-Value=0.44)
          Length = 585

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 156 LINKRAMASYQEHTNEDDDNPIPGTSQTMGATPRGNVLN---RVTHQQDKWKRQVREQRR 212
           L+ + +M +  +  +    NPI   ++ +GA  +GN +N   +   QQ + ++Q ++Q+ 
Sbjct: 70  LMKQPSMQTIMKQADSSQGNPI---NERIGAGAQGNPINLQQQQAQQQQQQQQQQQQQQP 126

Query: 213 NIYDRHTML 221
               +HT L
Sbjct: 127 ATQPQHTSL 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.139    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,084,079
Number of Sequences: 59808
Number of extensions: 334290
Number of successful extensions: 618
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 617
Number of HSP's gapped (non-prelim): 5
length of query: 222
length of database: 16,821,457
effective HSP length: 79
effective length of query: 143
effective length of database: 12,096,625
effective search space: 1729817375
effective search space used: 1729817375
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)