Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002113-TA|BGIBMGA002113-PA|IPR009060|UBA-like
(435 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 30 0.73
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 29 1.3
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 29 1.7
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 28 2.2
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 28 2.9
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 27 3.9
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 27 3.9
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 27 5.1
SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces po... 27 6.8
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce... 26 9.0
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 29.9 bits (64), Expect = 0.73
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 19 PMTGTPQASIWFNVRYLKSVFPKADETIIIDVLANKDNNVQKASEELIGLGYVKKD--IS 76
P+T T +I +V++++S P+A +I+ LA + + A+ ++ Y+ D I
Sbjct: 251 PVTTTSPNAIIRSVQWIRSFVPQAPIHQVINTLAQTKWD-ETAALSILSQKYLSCDLGIP 309
Query: 77 AQQKKKDIPTPQPIKKVVIMKTNEEKQLLKRQFELKYPWIPERSVPA 123
Q+ K+ +P +N Q KR KY +P S A
Sbjct: 310 IQEHKRFKQSPVASNMPTYGSSNRTVQSQKRSIRDKYIQMPNDSTQA 356
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 29.1 bits (62), Expect = 1.3
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 296 TRRDSSVVFDYEPSQ----PAPVQASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQANG 351
T+ D +V ++P P+ + +L + +K + KTN+ + +K ++
Sbjct: 840 TKTDKIIVHKWQPQPVNTIPSSLSLGEQLSAFNNFMKLLKKTNDEHQNLHKEMLVVLSSQ 899
Query: 352 PNPTLRRGPRESLLLEDYMPWN 373
P T RR DY+ N
Sbjct: 900 PKSTFRRAVENWKYKSDYLQLN 921
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 28.7 bits (61), Expect = 1.7
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 139 AVRQGHIRLAPRLESLYADDWDAAGYLKSVFPKADETIIIDVLANKDNNVQKASEELIGL 198
A Q + RL PR A+ A LK FP D+ II VLA ++ A L+GL
Sbjct: 2 ASEQSNPRL-PRRPPYMAEK--ARATLKEAFPNTDDAIIRAVLAASGYKLEPAFNALLGL 58
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 35 LKSVFPKADETIIIDVLANKDNNVQKASEELIGL 68
LK FP D+ II VLA ++ A L+GL
Sbjct: 25 LKEAFPNTDDAIIRAVLAASGYKLEPAFNALLGL 58
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 28.3 bits (60), Expect = 2.2
Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 29/158 (18%)
Query: 183 NKDNNVQKASEELIGLGYVKKDISAQQKKKDI----------PTPQPIKKVVIMKTNE-E 231
N D ++Q AS+ LG V+++ ++++++ I P P P++ V+ + NE E
Sbjct: 221 NSDPSLQAASQHS-NLGSVQREYNSEEQESRIHMFEIDEDVLPLPVPLQSVMDSEHNENE 279
Query: 232 KQLLKRQFELKYPWIPERLIIIALESVDFNEDRAHHILSTVSKEEATHQARAPEVQMPRR 291
+ LKR+ K E I L + ++ R +++ ++ E AT R ++
Sbjct: 280 PRALKRRKVQKLLEPDEN---IELSTRTLSQWRKNYVERMIALE-ATKYVRRRGASSAKK 335
Query: 292 FVPDTRRDSSVVFDYEPSQPAPVQASRRLKIWTEKLKP 329
++ + FD+E P LK W EKLKP
Sbjct: 336 ------KELNKFFDWESFHPL-------LKPWIEKLKP 360
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.9 bits (59), Expect = 2.9
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 285 EVQMPRRFVPDTRRDSSVVFDYEPSQPAPVQASRRLKIWTEKLKPILKTNNGAETKYKSP 344
E Q+ F R S++F E AP+++S++ + + + +L +G +T+ +
Sbjct: 456 ERQLRLLFEEARRVQPSIIFFDEIDGLAPIRSSKQEQTHSSIVSTLLALMDGLDTRGQVV 515
Query: 345 YCSQANGPN---PTLRRGPR 361
N PN P LRR R
Sbjct: 516 VIGATNRPNDLDPALRRPGR 535
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 27.5 bits (58), Expect = 3.9
Identities = 35/136 (25%), Positives = 51/136 (37%), Gaps = 7/136 (5%)
Query: 36 KSVFPKADETIIIDVLANKDNNVQKASEELIGLGYVKKDISAQQKKKDIPTPQPIKKVVI 95
KSV KA +I D ANK + E L L + D P V
Sbjct: 919 KSVLEKAGVIVIRDASANKGGVTSSSLEVLASLSFDDASFKENMCVHDGKVPTFYADYV- 977
Query: 96 MKTNEEKQLLKRQFELKYPWIPERSVPAGGPTTAERNQRLQRDAVRQGHIRLAPRLESLY 155
NE K++++R L++ I + P T+ N L + V+ H E L+
Sbjct: 978 ---NEVKRIIQRNANLEFEAIWKGHSENKIPYTSLSN-HLSTEIVKLDHD--IYNYEKLW 1031
Query: 156 ADDWDAAGYLKSVFPK 171
AD L++ PK
Sbjct: 1032 ADVGFRNAVLRASIPK 1047
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 27.5 bits (58), Expect = 3.9
Identities = 58/259 (22%), Positives = 102/259 (39%), Gaps = 33/259 (12%)
Query: 112 KYPWIPERSVPAGGPTTAERN-QRLQRDAVRQGHIRLAPRLESLYADDWDAAGYLKSVFP 170
K+P + E S+ P + R+ Q L R+ + +L L D A L V
Sbjct: 148 KFPAVDEDSIAVMKPNNSLRSAQELAREDLEAHKAKLQELLRRGTPMDLAEANALMKVIA 207
Query: 171 KADETIIID--VLANKDNNVQKASEELIGLGYVKKDISAQQKK-----KDIPTPQPIKKV 223
DE D LA D ++ + V + +S ++ + + Q
Sbjct: 208 GYDEENTEDYSALAAADLESIRSKALRVKQFLVNQTVSLEEGTLADAVESLKVYQTKIAR 267
Query: 224 VIMKTNEEKQLLKRQFELKYPWIPERLIIIALESVDFNEDRAHHILSTVSKEEATHQARA 283
++ + NE++ +++ L L+I +E N D H + VS + ++
Sbjct: 268 ILREENEDEYYVQKLLSLN------DLLINVIEECS-NSDLIHSGTNVVSSQPNVVESHV 320
Query: 284 PEVQMPRRFVPDTRRDSSVV----FDYEPSQPAP-----VQASRRLKIWTEKLKPILKTN 334
P DT+++SS++ EP+ P+P V A++ L + + + T+
Sbjct: 321 PPSSN------DTKQESSLIDLMKLTEEPAVPSPSLPTNVPANQSLSMLSSLSNSMSSTS 374
Query: 335 NGAETKYKSPYCSQANGPN 353
NGA SP SQA PN
Sbjct: 375 NGA---LNSPSYSQAAIPN 390
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 27.1 bits (57), Expect = 5.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 130 ERNQRLQRDAVRQGHIRLAPRLESL 154
E++ ++Q+D V++ H RL RLE +
Sbjct: 93 EQDLKIQKDLVKETHARLEQRLEEI 117
>SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 189
Score = 26.6 bits (56), Expect = 6.8
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 234 LLKRQFELKYPWIPERLIIIALESVDFNEDRAHHILS 270
+++R +P +P+ + + LES+D+ H I++
Sbjct: 60 VVERDGSFTFPNVPDEIYFLRLESIDYEFSEFHIIIN 96
>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 3 FAKGISGSLHGSSHYTPMTGTPQASIWFNV 32
F K +SG + + TP+ TP AS+ N+
Sbjct: 98 FGKTVSGKVRNLGNLTPLEQTPLASVGKNL 127
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.131 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,572
Number of Sequences: 5004
Number of extensions: 96101
Number of successful extensions: 210
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 14
length of query: 435
length of database: 2,362,478
effective HSP length: 75
effective length of query: 360
effective length of database: 1,987,178
effective search space: 715384080
effective search space used: 715384080
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)
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