Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002113-TA|BGIBMGA002113-PA|IPR009060|UBA-like
(435 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0715 + 31416338-31416500,31416601-31416710,31416808-314168... 40 0.004
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588... 37 0.027
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 36 0.063
09_04_0160 + 15226762-15227032,15227138-15227373,15227469-152275... 34 0.19
05_03_0364 + 13007002-13007538,13007965-13008393,13008649-130089... 32 1.0
05_01_0522 - 4506667-4507254,4507474-4507824,4507967-4508163,450... 32 1.0
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688... 31 1.8
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898... 30 4.2
03_01_0602 - 4428651-4428847,4429070-4429150,4429226-4429604,443... 30 4.2
01_05_0604 - 23583244-23584989 30 4.2
03_06_0596 + 34964109-34964189,34964286-34964481,34964567-349647... 29 5.5
11_04_0014 - 12253341-12253358,12253520-12253729,12254388-122545... 29 7.3
10_08_0849 + 21040043-21040199,21040620-21040678,21040925-210424... 29 7.3
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 29 7.3
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980... 29 9.6
>01_06_0715 +
31416338-31416500,31416601-31416710,31416808-31416880,
31416988-31417135,31417867-31418133,31418234-31418576,
31418665-31418802,31419389-31419514,31419626-31419838,
31419918-31420164,31420247-31420446,31420538-31420891,
31420984-31421568
Length = 988
Score = 39.9 bits (89), Expect = 0.004
Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 6/142 (4%)
Query: 241 LKYPWIPERLIIIALESVDFNEDRAHHILSTVSKEEATHQARAPEVQMPRRFVPDTRRDS 300
LK P + ++++ +VD+ ++ +S T ++ A + RR+VP ++
Sbjct: 276 LKEPPLITANTVLSILAVDYPVEKISCYVSDDGSAMLTFESLAETAEFARRWVPFCKK-- 333
Query: 301 SVVFDYEPSQPAPVQASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQANGPNPTLRRGP 360
+ EP P S+++ +K+ P A + Y + N ++ P
Sbjct: 334 ---YSIEPRAPE-FYFSQKIDYLKDKIHPSFVKERRAMKRDYEEYKVRINALVAKAQKTP 389
Query: 361 RESLLLEDYMPWNGPNPEYRAG 382
E +++D PW G NP G
Sbjct: 390 EEGWIMQDGTPWPGNNPRDHPG 411
>07_01_0766 -
5885207-5885791,5885874-5886224,5886252-5886269,
5886339-5886541,5886632-5886890,5887052-5887264,
5887357-5887482,5887590-5887727,5887817-5888162,
5888254-5888520,5888983-5889172,5889264-5889363,
5889444-5889694,5889990-5890182,5890313-5890336
Length = 1087
Score = 37.1 bits (82), Expect = 0.027
Identities = 29/142 (20%), Positives = 60/142 (42%), Gaps = 6/142 (4%)
Query: 241 LKYPWIPERLIIIALESVDFNEDRAHHILSTVSKEEATHQARAPEVQMPRRFVPDTRRDS 300
+K P + ++++ +VD+ D+ +S T A A + R++VP ++
Sbjct: 365 MKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFVKK-- 422
Query: 301 SVVFDYEPSQPAPVQASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQANGPNPTLRRGP 360
++ EP P S+++ +K+ P + A + + + NG ++ P
Sbjct: 423 ---YNIEPRAPE-WYFSQKIDYLKDKVHPSFVKDRRAMKREYEEFKVRINGLVAKAQKVP 478
Query: 361 RESLLLEDYMPWNGPNPEYRAG 382
E +++D PW G N G
Sbjct: 479 EEGWIMQDGTPWPGNNTRDHPG 500
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 35.9 bits (79), Expect = 0.063
Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 6/142 (4%)
Query: 241 LKYPWIPERLIIIALESVDFNEDRAHHILSTVSKEEATHQARAPEVQMPRRFVPDTRRDS 300
LK P I ++++ +VD+ DR +S + + RR+VP ++
Sbjct: 302 LKEPPIITANTVLSILAVDYPVDRVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKK-- 359
Query: 301 SVVFDYEPSQPAPVQASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQANGPNPTLRRGP 360
F EP P S+++ +K++P A + + + N ++ P
Sbjct: 360 ---FTIEPRAPE-FYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKP 415
Query: 361 RESLLLEDYMPWNGPNPEYRAG 382
E +++D PW G N G
Sbjct: 416 EEGWVMQDGTPWPGNNTRDHPG 437
>09_04_0160 +
15226762-15227032,15227138-15227373,15227469-15227565,
15227657-15227783,15227870-15228482,15228572-15228835,
15228918-15229130,15229253-15229460,15229552-15229748,
15229830-15230183,15230287-15230874
Length = 1055
Score = 34.3 bits (75), Expect = 0.19
Identities = 28/142 (19%), Positives = 58/142 (40%), Gaps = 6/142 (4%)
Query: 241 LKYPWIPERLIIIALESVDFNEDRAHHILSTVSKEEATHQARAPEVQMPRRFVPDTRRDS 300
LK P + ++++ +VD+ D+ +S T ++ + + R++VP ++
Sbjct: 356 LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGASMLTFESLSETAEFARKWVPFCKK-- 413
Query: 301 SVVFDYEPSQPAPVQASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQANGPNPTLRRGP 360
F EP P S+++ +K+ P A + + + N ++ P
Sbjct: 414 ---FSIEPRAPE-FYFSQKVDYLKDKVHPNFVQERRAMKREYEEFKVRINALVAKAQKVP 469
Query: 361 RESLLLEDYMPWNGPNPEYRAG 382
E +++D PW G N G
Sbjct: 470 AEGWIMKDGTPWPGNNTRDHPG 491
>05_03_0364 +
13007002-13007538,13007965-13008393,13008649-13008990,
13009904-13010035,13010432-13010596
Length = 534
Score = 31.9 bits (69), Expect = 1.0
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 83 DIPTPQPIKKVVIMKTNEEKQLLKRQFELKYPWIP 117
D+P +P+K + +K N + + +F+++Y WIP
Sbjct: 244 DLPVKKPLKSKLAIKINAQGTEVVIRFDVRYKWIP 278
Score = 31.9 bits (69), Expect = 1.0
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 213 DIPTPQPIKKVVIMKTNEEKQLLKRQFELKYPWIP 247
D+P +P+K + +K N + + +F+++Y WIP
Sbjct: 244 DLPVKKPLKSKLAIKINAQGTEVVIRFDVRYKWIP 278
>05_01_0522 -
4506667-4507254,4507474-4507824,4507967-4508163,
4508324-4508582,4508656-4508868,4508946-4509071,
4509159-4509296,4509376-4509721,4509822-4510088,
4510427-4510616,4510700-4510784,4510885-4511072,
4511262-4511457,4512027-4512113
Length = 1076
Score = 31.9 bits (69), Expect = 1.0
Identities = 27/142 (19%), Positives = 57/142 (40%), Gaps = 6/142 (4%)
Query: 241 LKYPWIPERLIIIALESVDFNEDRAHHILSTVSKEEATHQARAPEVQMPRRFVPDTRRDS 300
LK P + ++++ +VD+ D+ +S T +A + + R++VP ++
Sbjct: 361 LKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKK-- 418
Query: 301 SVVFDYEPSQPAPVQASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQANGPNPTLRRGP 360
+ EP P ++++ +K++P A + + + N ++ P
Sbjct: 419 ---HNIEPRAP-EFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKVP 474
Query: 361 RESLLLEDYMPWNGPNPEYRAG 382
E + D W G NP G
Sbjct: 475 EEGWTMADGTAWPGNNPRDHPG 496
>03_06_0389 -
33567385-33567969,33568052-33568402,33568646-33568848,
33569044-33569299,33569459-33569671,33569757-33569882,
33569965-33570102,33570191-33570536,33570630-33570896,
33571192-33571378,33571457-33571556,33571659-33571909,
33572242-33572428,33572562-33572573
Length = 1073
Score = 31.1 bits (67), Expect = 1.8
Identities = 27/142 (19%), Positives = 58/142 (40%), Gaps = 6/142 (4%)
Query: 241 LKYPWIPERLIIIALESVDFNEDRAHHILSTVSKEEATHQARAPEVQMPRRFVPDTRRDS 300
+K P + ++++ +VD+ D+ +S T A A + R++VP ++
Sbjct: 358 MKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFCKK-- 415
Query: 301 SVVFDYEPSQPAPVQASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQANGPNPTLRRGP 360
+ EP P A +++ +K++ + A + + + N ++ P
Sbjct: 416 ---YSIEPRAPEWYFA-QKIDYLKDKVQASFVKDRRAMKREYEEFKVRVNALVAKAQKVP 471
Query: 361 RESLLLEDYMPWNGPNPEYRAG 382
E +++D PW G N G
Sbjct: 472 EEGWIMQDGTPWPGNNTRDHPG 493
>07_03_0123 -
13688562-13689146,13689233-13689583,13689665-13689861,
13689954-13690072,13690103-13690245,13690332-13690544,
13690649-13690774,13690891-13691028,13691109-13691454,
13691532-13691798,13691939-13691983,13692148-13692349,
13692405-13692507,13692599-13692810,13692891-13693113,
13693211-13693291
Length = 1116
Score = 29.9 bits (64), Expect = 4.2
Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 6/136 (4%)
Query: 241 LKYPWIPERLIIIALESVDFNEDRAHHILSTVSKEEATHQARAPEVQMPRRFVPDTRRDS 300
LK P + ++++ +VD+ D+ +S T +A + + +++VP ++
Sbjct: 401 LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKK-- 458
Query: 301 SVVFDYEPSQPAPVQASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQANGPNPTLRRGP 360
+ EP P +++ +K+ P A + + + N ++ P
Sbjct: 459 ---YSIEPRAPE-WYFQQKIDYLKDKVAPYFVRERRAMKREYEEFKVRINALVAKAQKVP 514
Query: 361 RESLLLEDYMPWNGPN 376
E ++D PW G N
Sbjct: 515 EEGWTMQDGTPWPGNN 530
>03_01_0602 -
4428651-4428847,4429070-4429150,4429226-4429604,
4430084-4430216,4430298-4430404,4430490-4430761,
4431581-4431755
Length = 447
Score = 29.9 bits (64), Expect = 4.2
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 116 IPERSVPAGGPTTAERNQRLQRD--AVRQGHIRLAPRLESLYADDWDAAGYLKSVF 169
+ E +P P ++ R +R +R A+R GH A + S DD + AG+ +S F
Sbjct: 65 VHECVLPLSRPPSSRRRRRRKRTPMALRGGHAAAAAGVSSGSEDDDEEAGFSRSYF 120
>01_05_0604 - 23583244-23584989
Length = 581
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 325 EKLKPILKTNNGAETKYKSPYCSQAN---GP--NPTLRRGPRES 363
+ +KP +K G K++SPY S +N GP P L RG E+
Sbjct: 125 DPIKPTIKYGKGGIGKFESPYDSDSNYDMGPPTEPELERGTGEA 168
>03_06_0596 +
34964109-34964189,34964286-34964481,34964567-34964775,
34964868-34964970,34965053-34965227,34965617-34965883,
34965966-34966311,34966396-34966533,34966645-34966770,
34966866-34967078,34967171-34967462,34967559-34967755,
34967844-34968194,34968290-34968874
Length = 1092
Score = 29.5 bits (63), Expect = 5.5
Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 6/136 (4%)
Query: 241 LKYPWIPERLIIIALESVDFNEDRAHHILSTVSKEEATHQARAPEVQMPRRFVPDTRRDS 300
+K P + ++++ +VD+ D+ +S T +A + + +++VP +R
Sbjct: 367 MKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKR-- 424
Query: 301 SVVFDYEPSQPAPVQASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQANGPNPTLRRGP 360
+ EP P +++ +K+ P A + + + N ++ P
Sbjct: 425 ---YSLEPRAP-EWYFQQKIDYLKDKVAPNFVRERRAMKREYEEFKVRINALVAKAQKVP 480
Query: 361 RESLLLEDYMPWNGPN 376
E ++D PW G N
Sbjct: 481 EEGWTMQDGTPWPGNN 496
>11_04_0014 -
12253341-12253358,12253520-12253729,12254388-12254523,
12254631-12254752,12254789-12254842,12254872-12255161,
12255737-12255948,12256008-12256475,12256560-12256856,
12257467-12258329,12258417-12258490,12258616-12258650,
12259024-12259087,12259452-12259733,12259870-12259946,
12260045-12260325
Length = 1160
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 23 TPQASIWFNVR-YLKSVFPKADETIIIDVLANKDNNVQKASEELIGLGYVKKDISAQQKK 81
T Q ++WFN R L + KAD+ ++++ + + +Q + L+G ++ IS Q+K
Sbjct: 547 TVQENLWFNARCRLSADMSKADKVLVVERVI-ESLGLQAVRDSLVGT-VEQRGISGGQRK 604
Query: 82 K 82
+
Sbjct: 605 R 605
>10_08_0849 +
21040043-21040199,21040620-21040678,21040925-21042494,
21042583-21042710,21042793-21043033,21043160-21043710
Length = 901
Score = 29.1 bits (62), Expect = 7.3
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 72 KKDIS-AQQKKKDIPTPQPIKKVVIMKTNEEKQL 104
+KD S +QK + PQP+ K+VI+K N+ +++
Sbjct: 324 RKDRSDRKQKPERANRPQPVSKIVILKPNQGRRI 357
Score = 29.1 bits (62), Expect = 7.3
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 202 KKDIS-AQQKKKDIPTPQPIKKVVIMKTNEEKQL 234
+KD S +QK + PQP+ K+VI+K N+ +++
Sbjct: 324 RKDRSDRKQKPERANRPQPVSKIVILKPNQGRRI 357
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 248 ERLIIIALESVDFNEDRAHHILSTVSKEEATHQARAPEVQMPRRFVPDTRRDSSVVFDYE 307
E ++ + + ++AHH+L V H AP + +PR P S++ +
Sbjct: 237 EPVLSVPMPLASATVEQAHHLLCHVRPLLLLHCTLAPHLCVPRVLSPPAPMPSALA-THV 295
Query: 308 PSQPAP 313
P+ PAP
Sbjct: 296 PTPPAP 301
>10_06_0028 -
9802362-9802475,9802919-9803090,9803167-9803208,
9803344-9804011,9804098-9804418,9804495-9804833,
9804856-9805109,9805300-9805510
Length = 706
Score = 28.7 bits (61), Expect = 9.6
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Query: 39 FPKADETIIIDVLANKDNNVQKASEELIGLGYVKKDISAQQKKKDIPTPQPIKKVVIMKT 98
FP + +D Q E+ +GY + A +K I + I+K
Sbjct: 46 FPATPAMLSMDARVPSTRRTQVGDREVDDIGYPTASMKAVKKFPTICGVLGRRNFTILKD 105
Query: 99 N------EEKQLLKRQFELKYPWIPERSVPAGGPTTAERNQRLQRDA 139
+ EEK+ RQF+ + + R+ AG P E ++ Q +A
Sbjct: 106 HIDLVPQEEKEEAWRQFKESFQYPTGRTQAAGYPQDGELLEKFQDNA 152
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.131 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,122,825
Number of Sequences: 37544
Number of extensions: 586206
Number of successful extensions: 1151
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1142
Number of HSP's gapped (non-prelim): 17
length of query: 435
length of database: 14,793,348
effective HSP length: 84
effective length of query: 351
effective length of database: 11,639,652
effective search space: 4085517852
effective search space used: 4085517852
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -