Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002113-TA|BGIBMGA002113-PA|IPR009060|UBA-like
(435 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23319| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 9e-06
SB_59115| Best HMM Match : Spectrin (HMM E-Value=0) 41 0.002
SB_29956| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_10900| Best HMM Match : I-set (HMM E-Value=0) 31 1.4
SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07) 31 2.4
SB_32182| Best HMM Match : Ribosomal_L14 (HMM E-Value=3) 30 3.2
SB_27453| Best HMM Match : DUF471 (HMM E-Value=4.4) 30 3.2
SB_12307| Best HMM Match : Death (HMM E-Value=0.00097) 30 3.2
SB_57640| Best HMM Match : DUF632 (HMM E-Value=2.8) 30 4.2
SB_45941| Best HMM Match : DUF632 (HMM E-Value=2.8) 30 4.2
SB_45080| Best HMM Match : DAGAT (HMM E-Value=0) 29 5.6
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_31322| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_4225| Best HMM Match : DUF1197 (HMM E-Value=4.5) 29 5.6
SB_7210| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.4
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.4
SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.8
>SB_23319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 48.8 bits (111), Expect = 9e-06
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 9/125 (7%)
Query: 272 VSKEEATH--QARAPEVQMPRRFVPDTRRDSSVVFDYEPSQPAPVQASR---RLKIWTEK 326
V+KE++ +++ PE + P++ PDT +++ +PS P + R + K
Sbjct: 110 VAKEKSAKPKESKKPETKKPKK--PDTAPKATIKATPKPSAPVASTSKTTPARGRAGPSK 167
Query: 327 LKPILKTNNGAETKYKSPYCSQANGPNPTLRRGPRESLLLEDYMPWNGPNPEYRAG-NAV 385
+ +KT ++KSP + + G +P L +GP SLL+ ++ GP R G N
Sbjct: 168 TRQPIKTKP-KPPEFKSPLRTASTGVDPALAKGPNASLLIPQWVQTKGPAGSNRQGPNRA 226
Query: 386 RVEGP 390
V+GP
Sbjct: 227 LVQGP 231
>SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1457
Score = 40.7 bits (91), Expect = 0.002
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 216 TPQPIKKVVIMKTNEEK-QLLKRQFELKYPWIPERLIIIALESVDFNED-----RAHHIL 269
T ++ ++K E + Q K + K WI + ++ +V+FNED H L
Sbjct: 791 TTDTANRITLLKAIEPRLQHAKSDMDEKVQWITDTETLLLSPNVNFNEDAMSSEELHSQL 850
Query: 270 STVSKEEATHQARAPEVQMPRRFVPDTRRDSSVVFDYEPSQPAPVQASRRLKIWTEKLKP 329
S + E+T + RAP V ++ + + ++ AP+ R LK++ EK +
Sbjct: 851 SLIESLESTRKHRAPSVTALQKKCEEIKEHCGA------NKTAPIAMERDLKVFLEKWEH 904
Query: 330 ILK 332
+ K
Sbjct: 905 VAK 907
>SB_29956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 31.5 bits (68), Expect = 1.4
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 272 VSKEEATH--QARAPEVQMPRRFVPDTRRDSSVVFDYEPSQPAPVQASRRLKIWTEKLKP 329
V+KE++ +++ PE + P++ PDT +++ +PS APV + T K P
Sbjct: 13 VAKEKSAKPKESKKPETKKPKK--PDTAPKATIKATPKPS--APVAS-------TSKTTP 61
Query: 330 ILKTNNGAETKYKSPYCSQANGPNPTLRRGPRESLL 365
++T+ P Q GP + R+GP +L+
Sbjct: 62 ARGRAGPSKTRQPIPQWVQTKGPAGSNRQGPNRALV 97
>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
Length = 1642
Score = 31.5 bits (68), Expect = 1.4
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 14/136 (10%)
Query: 9 GSLHGSSHYTPMTGTPQASIWFNVRYLKSVFPKADETIIIDVLANK--DNNVQKASEELI 66
G G S TP+ P ++ + PK D+ I+ + + + D+++ + L
Sbjct: 1399 GDTAGESERTPINDVPTDEHPYDDAQVGRDSPKDDDAILNQIYSPRSDDDSIAEDPSHLN 1458
Query: 67 GLGYV------------KKDISAQQKKKDIPTPQPIKKVVIMKTNEEKQLLKRQFELKYP 114
L + +K+ +A + + P P P+ + + + ++ YP
Sbjct: 1459 DLNHPLSLQDKTPPFPERKNTTASEVSIEFPPPPPLDTLPDEERQAVEGYSPVDSDVSYP 1518
Query: 115 WIPERSVPAGGPTTAE 130
W PE VP P T E
Sbjct: 1519 WPPESPVPMKPPRTFE 1534
>SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07)
Length = 423
Score = 30.7 bits (66), Expect = 2.4
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 188 VQKASEELIGLGYVKKDISAQQKKKDIPTPQPIKKVVIMKTNEE--KQLLKRQFELKYPW 245
V+K +EE +G ++ +++ + +P ++ KTNEE +++ K Q +
Sbjct: 150 VEKTNEEDKEVGRIRVQYKKHKEEIEKNQHRPHHIPIVQKTNEEDKEEIEKNQHRPHHIP 209
Query: 246 IPERLIIIALESVDFNEDRAHHI 268
I E+ E ++ N+ R HHI
Sbjct: 210 IVEKTNEEDKEEIEKNQHRPHHI 232
>SB_32182| Best HMM Match : Ribosomal_L14 (HMM E-Value=3)
Length = 294
Score = 30.3 bits (65), Expect = 3.2
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 315 QASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQANGPNPTLRRGPRESLLLED 368
+++ RL+ W+ +L+P E +YK P S P LRRGPRES ++D
Sbjct: 34 KSTPRLERWSLRLEPF-----DFELQYK-PGESNIADPMSRLRRGPRESTKVDD 81
>SB_27453| Best HMM Match : DUF471 (HMM E-Value=4.4)
Length = 195
Score = 30.3 bits (65), Expect = 3.2
Identities = 23/90 (25%), Positives = 41/90 (45%)
Query: 48 IDVLANKDNNVQKASEELIGLGYVKKDISAQQKKKDIPTPQPIKKVVIMKTNEEKQLLKR 107
I L NK ++ E ++ + KDI +K+ + QPI + +KT+++K+ +R
Sbjct: 25 ISGLVNKGKMKEEEIESVLKFLFPSKDIGDFEKRVRRNSVQPIPYITSLKTSKKKKKRER 84
Query: 108 QFELKYPWIPERSVPAGGPTTAERNQRLQR 137
+ E + I A P R +L R
Sbjct: 85 RAEEEDWRIRPEDQDAPLPQVVVRGGKLPR 114
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 178 IDVLANKDNNVQKASEELIGLGYVKKDISAQQKKKDIPTPQPIKKVVIMKTNEEKQLLKR 237
I L NK ++ E ++ + KDI +K+ + QPI + +KT+++K+ +R
Sbjct: 25 ISGLVNKGKMKEEEIESVLKFLFPSKDIGDFEKRVRRNSVQPIPYITSLKTSKKKKKRER 84
Query: 238 QFE 240
+ E
Sbjct: 85 RAE 87
>SB_12307| Best HMM Match : Death (HMM E-Value=0.00097)
Length = 1366
Score = 30.3 bits (65), Expect = 3.2
Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 16/174 (9%)
Query: 41 KADETIIIDVLANKDNNVQKASEELIGLGYVKKDISAQQKKKDIPTPQPIKKVVIMKTNE 100
++D+ I + V N +K E+ I +G + +S+ QK+K + + +K + E
Sbjct: 424 QSDDAIALMVYENL--RARKKDEQPIRVG--EDRLSSMQKEKVL---EALKDSMSKLWLE 476
Query: 101 EKQLLKRQFELKYPWIPERSVPAGGPTTAERNQRLQR------DAVRQGHIRLAPRLESL 154
E + + +K + E G P R Q +R D +R+G L+ + + +
Sbjct: 477 ENLVQEPPTSVKQEDLDESETTVGIPVPDCRWQLPERIEKKIIDLLRKGDNSLSEKRKEI 536
Query: 155 YADDWDAAG--YLKSVFPKADETIIIDVLA-NKDNNVQKASEELIGLGYVKKDI 205
D WD AG + P + + VL N +++K +E + G VKK +
Sbjct: 537 VLDAWDFAGQHLYYATHPVFFSSRAVYVLTHNLSKDLRKKAEPCVRQGVVKKKL 590
>SB_57640| Best HMM Match : DUF632 (HMM E-Value=2.8)
Length = 560
Score = 29.9 bits (64), Expect = 4.2
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 203 KDISAQQKKKDIPTPQPIKKVVIMKTNEEKQLLK---RQFELKYPWIPERL--IIIALES 257
K IS +KK+D+ T I + V+ T E QLL RQ K ++ E++ + ++ ++
Sbjct: 67 KSISKDKKKEDLHTASDIIRRVLYSTKENVQLLHEVLRQHTEKPIFMQEQVHGVTLSSDA 126
Query: 258 VDFNEDRA 265
VD D A
Sbjct: 127 VDSKSDLA 134
>SB_45941| Best HMM Match : DUF632 (HMM E-Value=2.8)
Length = 688
Score = 29.9 bits (64), Expect = 4.2
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 203 KDISAQQKKKDIPTPQPIKKVVIMKTNEEKQLLK---RQFELKYPWIPERL--IIIALES 257
K IS +KK+D+ T I + V+ T E QLL RQ K ++ E++ + ++ ++
Sbjct: 111 KSISKDKKKEDLHTASDIIRRVLYSTKENVQLLHEVLRQHTEKPIFMQEQVHGVTLSSDA 170
Query: 258 VDFNEDRA 265
VD D A
Sbjct: 171 VDSKSDLA 178
>SB_45080| Best HMM Match : DAGAT (HMM E-Value=0)
Length = 337
Score = 29.5 bits (63), Expect = 5.6
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 109 FELKYPWIPERS---VPAGGPTTAERNQRLQRDAVRQGHIRLAPRLESLYADDWDAAGYL 165
F+ + +P R V G P E+N+ RD V++ H +L L+ D+ + G
Sbjct: 270 FQYTFGLLPHRKPIHVVVGSPIEVEKNENPSRDEVQRVHDLYEDKLVKLFEDNKEKYGLK 329
Query: 166 K 166
K
Sbjct: 330 K 330
>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2209
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 24 PQAS-IWFNVRYLKSVFPKADETIIIDVLANKDNNVQKASEELIGLGYVKKDI 75
P+A I+ +R++ ++F + II+D A+KD V++ S++L+ L + + +
Sbjct: 1118 PEAGQIYILLRFVSALFEGTNTLIILDCSASKD--VKRRSDKLVNLAFSARHV 1168
>SB_31322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 29.5 bits (63), Expect = 5.6
Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 12/142 (8%)
Query: 270 STVSKEE-ATHQARAPEVQMPRRFVPDTRRDSSVVFD---YEPSQPAPVQASRRLKIWTE 325
+T SK TH+ P+ + P ++VP+ R +V + Y S+ P + + LK T
Sbjct: 155 NTTSKTSYITHEVSPPKKKEPEKYVPNPNRFETVSENKDHYRGSRAPPARMNPYLKGITM 214
Query: 326 KLK----PILKTNNGAETKYK-SPY--CSQANGPNPTLRRGPRESLLLEDYMPWN-GPNP 377
++ + T++G +K P S++ P + S+ +D+M +N P P
Sbjct: 215 RVPSAQIQYMSTSHGDYRTWKPEPLEKISRSKTYAPPEQPFNETSIHRQDFMRFNQPPRP 274
Query: 378 EYRAGNAVRVEGPEYRDVTQQT 399
R + +R+ G + T T
Sbjct: 275 TARQPDKIRMSGSMDKTTTNLT 296
>SB_4225| Best HMM Match : DUF1197 (HMM E-Value=4.5)
Length = 152
Score = 29.5 bits (63), Expect = 5.6
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 280 QARAPEVQMPRRFVPDTRRDSSVVFDYEPSQPAPVQASRRLKI-WTEKLKPILKTNNGAE 338
+ R P M R V T ++ + PS+ P+ + + LK I+ + G
Sbjct: 11 EQRGPSHNMWTRIVDSTITSNNAEPKFRPSEFIPLTTRNGMDTAQSTALKNIINADKGLG 70
Query: 339 TKYKSPYCSQANGPNPTLRRGPRES-LLLEDYMPWNGPNPEYRAG 382
K K NP G S LL+E+ +PW N Y G
Sbjct: 71 GKRK-------RSENPASTNGLETSELLIEETVPWKPKNRNYPDG 108
>SB_7210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 869
Score = 29.1 bits (62), Expect = 7.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 53 NKDNNVQKASEELIGLGYVKKDISAQQKKKDIPTPQPIKKV 93
+KD ++Q+ S +GLG D + Q+ K P+P K+
Sbjct: 454 HKDTSLQQRSNPCLGLGVSSSDKTLQRDTKSEEIPKPYMKM 494
Score = 29.1 bits (62), Expect = 7.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 183 NKDNNVQKASEELIGLGYVKKDISAQQKKKDIPTPQPIKKV 223
+KD ++Q+ S +GLG D + Q+ K P+P K+
Sbjct: 454 HKDTSLQQRSNPCLGLGVSSSDKTLQRDTKSEEIPKPYMKM 494
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 29.1 bits (62), Expect = 7.4
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 269 LSTVSKEEATHQARAPEVQMPRRFVPDTRRDSSVVFDYEPSQPAPVQASRRLK 321
+STVS + EV P +P+ R S V + P P P A R L+
Sbjct: 1006 MSTVSPKRTLGVVNTAEVNEPNITIPEAR--SPPVMLFRPVSPKPTHAQRHLE 1056
>SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 28.7 bits (61), Expect = 9.8
Identities = 12/54 (22%), Positives = 28/54 (51%)
Query: 54 KDNNVQKASEELIGLGYVKKDISAQQKKKDIPTPQPIKKVVIMKTNEEKQLLKR 107
K++ + + ++ GLG++ + Q + P P+ ++ + K +EK+ L R
Sbjct: 468 KEDILTQYADSFEGLGFLGPPVHFQLDESIQPVQMPVHRIPVAKREKEKEALDR 521
Score = 28.7 bits (61), Expect = 9.8
Identities = 12/54 (22%), Positives = 28/54 (51%)
Query: 184 KDNNVQKASEELIGLGYVKKDISAQQKKKDIPTPQPIKKVVIMKTNEEKQLLKR 237
K++ + + ++ GLG++ + Q + P P+ ++ + K +EK+ L R
Sbjct: 468 KEDILTQYADSFEGLGFLGPPVHFQLDESIQPVQMPVHRIPVAKREKEKEALDR 521
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.313 0.131 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,232,765
Number of Sequences: 59808
Number of extensions: 685507
Number of successful extensions: 1422
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1407
Number of HSP's gapped (non-prelim): 27
length of query: 435
length of database: 16,821,457
effective HSP length: 84
effective length of query: 351
effective length of database: 11,797,585
effective search space: 4140952335
effective search space used: 4140952335
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -