GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002113-TA|BGIBMGA002113-PA|IPR009060|UBA-like
         (435 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97012-9|AAK39142.2|  995|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AC084159-2|AAK39359.1|  659|Caenorhabditis elegans Hypothetical ...    30   2.8  
U00033-8|AAC48294.1|  315|Caenorhabditis elegans Hypothetical pr...    29   6.5  
AF043693-4|AAB97538.1|  971|Caenorhabditis elegans Hypothetical ...    29   6.5  
U40029-7|AAA81127.1|  645|Caenorhabditis elegans Yeast scc (mito...    29   8.5  

>U97012-9|AAK39142.2|  995|Caenorhabditis elegans Hypothetical
           protein C04E6.11 protein.
          Length = 995

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 3/93 (3%)

Query: 255 LESVDFNEDRAHHILSTVSKEEATHQARAPEVQMPRRFVPDTRRDSSVVFDYEPSQPAPV 314
           L+S   +E +   IL   SK++A  +A  PE Q  R +  D R      +  E  +    
Sbjct: 526 LKSYGISERQVWMILHRWSKQKAKQEAPQPEEQWSRPYAKDLRGWCRAYYS-ETFESPKT 584

Query: 315 QASRRLKIWTEKLKPILKTNNGAETKYKSPYCS 347
             +  + I  EKLK  +  + G  TK  S  CS
Sbjct: 585 TMNNSIPIPYEKLKSCV--DQGDITKVSSVLCS 615


>AC084159-2|AAK39359.1|  659|Caenorhabditis elegans Hypothetical
           protein Y73B3A.1 protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 2/103 (1%)

Query: 261 NEDRAHHILSTVSKEEATHQARAPEVQMPRRFVPDTRRDSSVVFDYEPSQPAPVQASRRL 320
           N   A+   +     EA+  A AP     RR V  T + S+  F      PA  Q  RR 
Sbjct: 345 NSPAANATAAREDAPEASIPAPAPSPPASRRSVSRTTQPSTSSFATPTEPPAKNQRKRR- 403

Query: 321 KIWTEKLKPILKTNNGAETKYKSPYCSQANGPNPTLRRGPRES 363
            +   K +P+L       T+ K     +        +R P ES
Sbjct: 404 -VVPPKSEPVLSAKRVRATEAKKKAVEKVKEKEKKEQRKPNES 445


>U00033-8|AAC48294.1|  315|Caenorhabditis elegans Hypothetical
           protein F37C12.2 protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 10/41 (24%), Positives = 25/41 (60%)

Query: 67  GLGYVKKDISAQQKKKDIPTPQPIKKVVIMKTNEEKQLLKR 107
           G+ +V++    + K+  +  P+P+++ V+M   E++ + KR
Sbjct: 21  GITFVRRIREEEAKEVKVEPPKPVERTVLMMRREKQGIFKR 61



 Score = 29.1 bits (62), Expect = 6.5
 Identities = 10/41 (24%), Positives = 25/41 (60%)

Query: 197 GLGYVKKDISAQQKKKDIPTPQPIKKVVIMKTNEEKQLLKR 237
           G+ +V++    + K+  +  P+P+++ V+M   E++ + KR
Sbjct: 21  GITFVRRIREEEAKEVKVEPPKPVERTVLMMRREKQGIFKR 61


>AF043693-4|AAB97538.1|  971|Caenorhabditis elegans Hypothetical
           protein C34B2.6 protein.
          Length = 971

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 87  PQPIKKVVIMKTNEEKQLLKRQFELKYPW 115
           P  IKKV I+K +  K L++RQ  LK P+
Sbjct: 101 PGFIKKVDIVKDDNLKALIRRQLSLKQPY 129



 Score = 29.1 bits (62), Expect = 6.5
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 217 PQPIKKVVIMKTNEEKQLLKRQFELKYPW 245
           P  IKKV I+K +  K L++RQ  LK P+
Sbjct: 101 PGFIKKVDIVKDDNLKALIRRQLSLKQPY 129


>U40029-7|AAA81127.1|  645|Caenorhabditis elegans Yeast scc (mitotic
           condensin subunit)homolog protein 1 protein.
          Length = 645

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 293 VPDTRRDSSVVFDYEPSQPAPVQASRRLKIWTEKLKPI 330
           V D + D  + FDY+P +P  V+ SR     +  L+P+
Sbjct: 276 VADVQNDDGMDFDYQPFEPENVEPSRPQSPESFALEPL 313


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.131    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,464,614
Number of Sequences: 27539
Number of extensions: 532516
Number of successful extensions: 1177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1170
Number of HSP's gapped (non-prelim): 8
length of query: 435
length of database: 12,573,161
effective HSP length: 83
effective length of query: 352
effective length of database: 10,287,424
effective search space: 3621173248
effective search space used: 3621173248
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)