GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002113-TA|BGIBMGA002113-PA|IPR009060|UBA-like
         (435 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    24   2.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   2.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   8.8  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    22   8.8  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 201 VKKDISAQQKKKDIPTPQPIKKVVIMKTNEEKQLLKRQFELKYPWIPERLI 251
           + K ++ ++ KK I     ++KV   K +  K+LL  QF  ++P   ERL+
Sbjct: 23  MSKKMTIEEAKKTIKN---LRKVCSKKNDTPKELLDGQFRGEFPQ-DERLM 69



 Score = 23.8 bits (49), Expect = 2.9
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 71  VKKDISAQQKKKDIPTPQPIKKVVIMKTNEEKQLLKRQFELKYP 114
           + K ++ ++ KK I     ++KV   K +  K+LL  QF  ++P
Sbjct: 23  MSKKMTIEEAKKTIKN---LRKVCSKKNDTPKELLDGQFRGEFP 63


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 357 RRGPRESLLLEDYMPWNGPNPEYRAGNAVRVEGPEYRDVTQQ 398
           R  P E  L    +  + P+P+Y + ++  ++ P  R  TQQ
Sbjct: 420 RTSPMEYRLYNPALIQSQPSPQYPSTSSHILQQPSIRTYTQQ 461


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 199 GYVKKDISAQQKKKDIPTPQPIKKVVIMKTNEEKQLLKRQFELKYPWIPERL 250
           GY K     Q   + +     +  V ++  NE+ Q++K    L++ W   +L
Sbjct: 37  GYNKLIRPVQNMTEKVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQL 88


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 216 TPQPIKKVVIMKTNEEKQLLKRQFELKYPWIPERLI 251
           T + ++KV   K +  K+LL  QF  ++P   ERL+
Sbjct: 9   TIKNLRKVCSKKNDTPKELLDGQFRGEFPQ-DERLM 43


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.131    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,441
Number of Sequences: 429
Number of extensions: 7157
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 7
length of query: 435
length of database: 140,377
effective HSP length: 60
effective length of query: 375
effective length of database: 114,637
effective search space: 42988875
effective search space used: 42988875
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)