GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002112-TA|BGIBMGA002112-PA|undefined
         (140 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    27   0.82 
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    27   1.1  
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.5  
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.5  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   2.5  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   2.5  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   3.3  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    25   3.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   4.4  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   5.8  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    24   7.6  

>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 27.5 bits (58), Expect = 0.82
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 53  SSPKLFHPKGLKPHLDARTF----ATPQESPVLG--RALCLTPRGSPIPGRVSHLNEKFQ 106
           S+ K      L P   A TF      P    +LG  + L LT   + I    S LNEK  
Sbjct: 92  STDKDIMNSSLNPASQAYTFDLGRTLPISEDILGYRKPLSLTDASNRIDA--SQLNEKEN 149

Query: 107 DSLTLNSDTD 116
           DS T+N + D
Sbjct: 150 DSFTINQEAD 159


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 15/51 (29%), Positives = 22/51 (43%)

Query: 40  PSPVRLQHAFQAQSSPKLFHPKGLKPHLDARTFATPQESPVLGRALCLTPR 90
           P   R Q  FQ  S   L+  + +   +  R    P+ + V  RA+C  PR
Sbjct: 165 PPLTREQAIFQISSGSNLYTSREVNDSISQRLKKFPKAANVKLRAICTVPR 215


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 85  LCLTPRGSPIPGRVSHLNEKFQDSLTL 111
           L L PRGS I GR     E+   SLT+
Sbjct: 85  LPLNPRGSGISGRPVESTEQLNSSLTI 111


>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 41  SPVRLQHAFQAQSSPKLFHPKGLKPHLDARTF---ATPQESPVLGRALCLTPRGSPIPGR 97
           +P RL  +  + SSP L     ++       F    + Q+SP   + L  TP GS +  +
Sbjct: 84  NPRRLSSSTSSASSPPLRRLPSVQHSTFDDLFEGVGSLQKSPSTTKPLSSTPSGSLLRSK 143

Query: 98  VSHLNEKF 105
             H  +KF
Sbjct: 144 FDHTRKKF 151


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 77  ESPVLGRALCLTPRGSPI-PGRVSHLNEK----FQDSLTLNSDTDSLVAKISAMFPTVSE 131
           +  +LGR L +    SPI P  ++ L +     F+D    N +T++L +++S   P + E
Sbjct: 190 QGSMLGRLL-IQKDESPINPSSITGLGKDWSTAFEDIPWKNPNTENLTSQVSIKEPKLYE 248

Query: 132 THIKILLKK 140
            H    +KK
Sbjct: 249 PHPTTAIKK 257


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 22  TVRNEQTTHGSPYHVHPYPSPVRLQHAFQAQSSPK---LFHPKGLKPHLDARTFATPQES 78
           T  +   +H +P H    PS    Q   QAQ  P+   LF    L     +R   +P  S
Sbjct: 67  TTSSPSFSHAAPLHPLSPPSFTHSQPQIQAQPVPRRPSLFDRPNLVSRSSSRLGDSPSLS 126

Query: 79  PV 80
           PV
Sbjct: 127 PV 128


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 38  PYPSPVRLQHAFQAQSSPKLFHPK 61
           P PSP+RL  A + +  P+ + PK
Sbjct: 89  PSPSPLRLNEAPRRRGRPRKYPPK 112


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 106 QDSLTLNSDTDSLVAKISAMFPTVSETHI 134
           Q SLTL++D  +  AK+  +   +S+THI
Sbjct: 242 QGSLTLSADKAARSAKLRKIDSNLSDTHI 270


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 59   HPKGLKPHLDARTFATPQESPVLG 82
            HPK +KPH + R F T   +PV G
Sbjct: 2068 HPKTIKPHPNFRLFLT--VNPVYG 2089


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 94  IPGRVSHLNEKFQDSLTLNSDTDSLVAK 121
           I GRVS L + F DS +++++T   + K
Sbjct: 744 ISGRVSKLVKSFNDSSSISNNTKISITK 771


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 83  RALCLTPRGS-PIPGRVSHLNEKFQDSL 109
           R L + P+   P P  + ++NEKF D L
Sbjct: 612 RPLVMVPKSKKPSPDTMFYVNEKFTDKL 639


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,707
Number of Sequences: 5004
Number of extensions: 27433
Number of successful extensions: 77
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 11
length of query: 140
length of database: 2,362,478
effective HSP length: 66
effective length of query: 74
effective length of database: 2,032,214
effective search space: 150383836
effective search space used: 150383836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)