Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002112-TA|BGIBMGA002112-PA|undefined
(140 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 27 4.2
11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368 27 7.4
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186... 27 7.4
12_02_0658 + 21608474-21609401,21609996-21610012 26 9.8
06_03_1445 - 30209354-30209396,30209798-30209875,30210220-302102... 26 9.8
06_03_1433 - 30129184-30129226,30129628-30129705,30130050-301301... 26 9.8
06_03_1416 + 30027066-30027663,30027739-30027848,30027927-300280... 26 9.8
06_01_1096 - 8988463-8989167,8989335-8989361,8989560-8989648,898... 26 9.8
05_04_0342 - 20425141-20425311,20425415-20425558,20426506-204266... 26 9.8
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 27.5 bits (58), Expect = 4.2
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 59 HPKG-LKPHLDARTFATPQESPVLGRAL 85
HP+ L PH + R A P SP+L RAL
Sbjct: 208 HPRRRLAPHANRRRPAPPPASPILHRAL 235
>11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368
Length = 601
Score = 26.6 bits (56), Expect = 7.4
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 30 HGSPYHVHPYPSPVRLQHAFQAQSSPKLFHPKGLKPHLDARTFATPQESPVLGR 83
HG+ V P PSP + Q++ SP+L G+ H+ +T + PQ + G+
Sbjct: 286 HGAGTSVSPSPSPTKA----QSRGSPQL----GVPLHVSLKTCSHPQNASSSGQ 331
>06_03_0927 +
26015956-26018230,26018323-26018471,26018550-26018618,
26018701-26018853,26018927-26019090,26019207-26019354,
26020348-26020470,26020560-26020647,26020781-26020950
Length = 1112
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 35 HVHPYPSPVRLQHAFQAQSSPK--LFHPKGLKPHL 67
H+HP P + +A Q + P L P GL H+
Sbjct: 350 HMHPVPHEREMMYAQQVEGIPNTVLIDPSGLHQHV 384
>12_02_0658 + 21608474-21609401,21609996-21610012
Length = 314
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 37 HPYPSPVRLQHAFQAQSSPKLFHPKGLKPHLDART 71
HP PS + + PK FHPK LD R+
Sbjct: 239 HPTPSLDGEEDVIYLLAKPKCFHPKAWVLALDTRS 273
>06_03_1445 -
30209354-30209396,30209798-30209875,30210220-30210285,
30212275-30212322,30212408-30212571,30212726-30213581,
30213673-30213786,30213853-30213996,30214075-30214304,
30214584-30214724,30214810-30214887,30214972-30215053,
30215130-30215184,30215284-30215407,30215548-30215641,
30215718-30215794,30215873-30215982,30216058-30216655
Length = 1033
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 65 PHLDARTFATPQESPVLGRALCLTPRGSPIPGR 97
P D + P+ P GR + PRG P PGR
Sbjct: 10 PPPDRQGQVPPRGDPPPGRQRQVPPRGDPPPGR 42
>06_03_1433 -
30129184-30129226,30129628-30129705,30130050-30130115,
30132105-30132152,30132238-30132401,30132556-30133411,
30133503-30133616,30133683-30133826,30133905-30134134,
30134414-30134554,30134640-30134717,30134802-30134883,
30134958-30135012,30135112-30135235,30135376-30135469,
30135546-30135622,30135701-30135810,30135886-30136483
Length = 1033
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 65 PHLDARTFATPQESPVLGRALCLTPRGSPIPGR 97
P D + P+ P GR + PRG P PGR
Sbjct: 10 PPPDRQGQVPPRGDPPPGRQRQVPPRGDPPPGR 42
>06_03_1416 +
30027066-30027663,30027739-30027848,30027927-30028003,
30028080-30028173,30028314-30028437,30028537-30028591,
30028666-30028747,30028832-30028909,30028995-30029135,
30029416-30029645,30029724-30029867,30029934-30030047,
30030139-30030994,30031149-30031312,30031398-30031445,
30033435-30033500,30033845-30033922,30034324-30034366
Length = 1033
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 65 PHLDARTFATPQESPVLGRALCLTPRGSPIPGR 97
P D + P+ P GR + PRG P PGR
Sbjct: 10 PPPDRQGQVPPRGDPPPGRQRQVPPRGDPPPGR 42
>06_01_1096 -
8988463-8989167,8989335-8989361,8989560-8989648,
8989830-8990039,8990877-8991047,8991595-8991777,
8991886-8991969,8992067-8992178
Length = 526
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 35 HVHPYPSPVRLQHAFQAQSSPKLFHPKGLKPH 66
H PY + +QHA Q Q +++H + L+ H
Sbjct: 420 HGRPYFNGWDMQHAPQQQPEQQMYHQQHLQQH 451
>05_04_0342 -
20425141-20425311,20425415-20425558,20426506-20426622,
20426719-20426835,20427533-20427678,20428208-20428293,
20428780-20428889
Length = 296
Score = 26.2 bits (55), Expect = 9.8
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 30 HGSPYHVHPYPSPVRLQHAFQAQSSPKLFHPKGLKPHLDARTFATPQESPVLGRALCLTP 89
H SP+H P SP + + A+ L + L P + F + + RA L P
Sbjct: 19 HSSPHHQSPLRSPASERERYLAE---LLAERQKLAPFMQVLPFCNRLLNQEILRASSLPP 75
Query: 90 RGSPI-PGRVSH 100
+ + P RV+H
Sbjct: 76 NPNFVEPERVNH 87
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.133 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,136,063
Number of Sequences: 37544
Number of extensions: 181308
Number of successful extensions: 446
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 15
length of query: 140
length of database: 14,793,348
effective HSP length: 75
effective length of query: 65
effective length of database: 11,977,548
effective search space: 778540620
effective search space used: 778540620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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