GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002112-TA|BGIBMGA002112-PA|undefined
         (140 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.62 
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_24935| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.5  
SB_15208| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)               27   5.8  
SB_25200| Best HMM Match : RVT_1 (HMM E-Value=1.7)                     27   7.6  

>SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 28 TTHGSPYHVHPYPSPVRLQHAFQAQSSPKLFHPKGLKPHLDARTFATPQESPVLGRALCL 87
          +T G+PY   P  SP  +    QA   P+L HP G  P L +     PQ S    R    
Sbjct: 28 STAGAPY---PGMSPTPVSSYGQATPPPQLQHPSGPNPGLGSAA-GYPQSSGGQIRGAGQ 83

Query: 88 TPRGSPIPG 96
             G PI G
Sbjct: 84 PVMGGPIGG 92


>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2408

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 12   VAVLFVRHVCTVRNEQTTHGSPYHVHPYPSPVRLQHAFQ------AQSSPKLFHPKGLKP 65
            VAV+ V   C+V   +  H +   ++  P+PV + H +Q      A +   + H   L P
Sbjct: 1027 VAVVEVLDKCSVARVEMEHCTRGGINSSPNPVTMTHRYQLLPHLSAMTHRAMTHRYQLLP 1086

Query: 66   HLDART 71
            HL A T
Sbjct: 1087 HLRAMT 1092


>SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1806

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 63  LKPHLDARTFATPQESPVLGRALCLTPR 90
           + P L  RT+AT  ++PVL   L  TPR
Sbjct: 460 ITPALQVRTYATSDQTPVLLTLLRFTPR 487


>SB_24935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 1/87 (1%)

Query: 22  TVRNEQTTHGSPYHVHPYPSPVRLQHAFQAQSSPKLFHPKGLKPHLDARTFATPQESPVL 81
           T R  ++   S Y VHP      LQ  F      K F  K  +  +D +TF T  E  + 
Sbjct: 72  TTRESRSYSTSSYEVHPPNDRKDLQSLFDRLGLAKYF-GKFQEQEIDLQTFMTLTEDDLK 130

Query: 82  GRALCLTPRGSPIPGRVSHLNEKFQDS 108
              +        +   +S LN K QD+
Sbjct: 131 EIGVSTFGPRRKLLMAISDLNNKQQDA 157


>SB_15208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 87  LTPRGSPIPGRVSHLNEKFQDSLTLNSDT 115
           L P G+P+PG ++H   K Q  L   S+T
Sbjct: 50  LYPNGTPVPGFLTHHTSKEQARLLSKSET 78


>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
          Length = 358

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 33  PYHVHPYPSPVRLQH 47
           PYH HPYPS   + H
Sbjct: 164 PYHPHPYPSSGPMHH 178


>SB_25200| Best HMM Match : RVT_1 (HMM E-Value=1.7)
          Length = 371

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 76  QESPVLGRALCLTPRGSPIPG--RVSHLNEKFQDSLTLNSDTDSLV 119
           +ESP L  A C  P  + +P   R S L E +    TL+  T +LV
Sbjct: 277 RESPSLAPASCRPPSNATLPSRERPSPLLEAWNRPATLHKGTTTLV 322


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,903,030
Number of Sequences: 59808
Number of extensions: 210859
Number of successful extensions: 582
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 7
length of query: 140
length of database: 16,821,457
effective HSP length: 75
effective length of query: 65
effective length of database: 12,335,857
effective search space: 801830705
effective search space used: 801830705
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)